Nothobranchius furzeri (turquoise killifish): 107393339
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Entry
107393339 CDS
T05163
Symbol
ncan
Name
(RefSeq) neurocan core protein
KO
K06794
neurocan core protein
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
nfu00535
]
107393339 (ncan)
00536 Glycosaminoglycan binding proteins [BR:
nfu00536
]
107393339 (ncan)
04091 Lectins [BR:
nfu04091
]
107393339 (ncan)
Proteoglycans [BR:
nfu00535
]
Extracellular matrix (ECM) proteoglycans
Aggrecan / versican family
107393339 (ncan)
Glycosaminoglycan binding proteins [BR:
nfu00536
]
Hyaluronan
Extracellular matrix or blood plasma proteins
107393339 (ncan)
Lectins [BR:
nfu04091
]
C-Type lectins
Group 1: Proteoglycan core proteins
107393339 (ncan)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Xlink
Lectin_C
EGF
V-set
Sushi
hEGF
EGF_2
Ig_3
I-set
EGF_CA
Motif
Other DBs
NCBI-GeneID:
107393339
NCBI-ProteinID:
XP_015827106
UniProt:
A0A1A8AKK8
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Position
sgr17:32863920..33120319
Genome browser
AA seq
1332 aa
AA seq
DB search
MQGIRPLWGQKPLLALLLLQAAGSGLTNADAVVNMRKVTHRTISEELSKTVLLPCLFTLR
PSAGSPHEHPRIKWTKVWGQRGSDGLQKEQSVLVAKDNVVKVKKAFQGRVALPGYNKDRY
NASLALTGLRSSDSGLYRCEVVVGINDEQDTVPLEVTGIVFHYRAPHDRYALSFADAKRV
CTENSAAIATPGQLQATFADGYDNCDAGWLADQTVRYPIQSPRPGCYGDREDSPGVRNYG
SRARDELFDVYCFAKQLQGEVFHSTVPEKLSLATASTHCHTLGAQLATVGQLYLAWQAGL
DQCDPGWLADGSVRYPINVPRKNCGGDEPGVRTVYNNPNRTGFPDTTALFDSFCYRAHQP
AGIQASEAKALHQTRPAAQELSPAPEAQRKSHSTETPAWAGLVDSNTTGLSFLVRINSSS
RTSEEHMVNLKHEDGWDERQNESRGSQHGQDETDGSKSNHTSGLFDFKMAESHGGSAQKE
EDYSYYEFDTSTPSSTPLPPTGSSILNGFLNTLMWPFKYWTGSQEANETAGSPSAPEGGA
GENQGQEQASNGNTSVPKQSEIKSITDNAILELKSGTFSLRGATGEQQSLEKELSEQEKE
LRPLIKLVPAVPEQRGNEGVANTYKHQSALNELPASGHVEKSLPIKQVNVSSPQSPKWDP
SIAPVVPSVHFQWAVKAMHGPKQELPENEAYVVKYPSWEPKEAKAGPLELITLPNSHQQE
NMENYSGEGKEVNSEGVGAVADRGGPASGEEKDVEGSGDESSFPAGFEMNVQNLSSIVVN
LSPKTEFSPITSDFVSLDERTTQPHWQLVEQSTISPQGLLEPATAEEAKEEVLYVHKPTD
NLFSDSPVQTTSESRREEMVTSTEASAEVLTTSEVTTVEILSVGPHRTDLTTEAITTENT
PESSAMEEPSISISWILEEKEEITSVPDLEERFSETLTPTERSQAGVSQWTTIASVSGVT
EMESRSAVSESFVVGSHWTPFKELTSKEPKASETTENKDSNNPFGSLVPNWAFGLISSVE
TNPCQTSPCLHGGSCLQEGDGYSCYCPQGFSGENCEIDIDDCQSNPCQNGGTCIDEINSF
VCLCLPSYGGATCEKDTEGCEHSWRKFHGHCYRYFSRRHTWEDAEKDCREHNGHLASIHS
TAEQNFIRGLSHDNTWIGLNDRTVEDDFQWTDKMDLQYENWRENQPDNFFAGGEDCVVMI
ARENGKWNDVPCNYNLPYVCKKGTVICGTPPTVDNAFLIGRKRSHYDIHSVVRYQCTDGF
LQRHVPTAKCRANGKWDRPKIICIRSRRAHRYRRHHHHHKGKRERRKHKRHGHRQGGHHG
GELSQAHSHAHF
NT seq
3999 nt
NT seq
+upstream
nt +downstream
nt
atgcaaggcatacggccgctgtggggacagaagcccttgctggcccttctcctgctccaa
gctgcaggttctggtttaactaacgctgacgctgtggttaatatgcggaaggtgactcat
cggaccattagtgaagagctctctaaaacggttctcctcccttgtctcttcaccctccgt
cccagtgccggttctccccacgaacatcccaggatcaagtggaccaaggtttggggccaa
agaggctcagacggcctacagaaggaacagtcggtgctagtggccaaagacaacgtggtc
aaggtgaagaaagccttccagggtcgtgtagcactgcctggttacaataaggaccgttac
aacgccagtctcgctttgactgggttacgctcaagtgactctggtctgtaccgctgtgag
gtggtggtgggcatcaatgacgagcaggacacagttccactggaggtcacaggcattgtg
ttccactaccgggccccacatgaccgctatgccttgtcctttgctgatgccaagagggtg
tgcacagaaaactcggctgccattgcaactcccggtcagctgcaagcaacctttgccgat
ggctatgacaattgcgatgctggctggctggctgatcagactgttcggtaccccatccaa
tcgcctcggcccggttgctatggtgatcgcgaggactcacctggtgtccgtaactatggc
agtagagcccgcgatgagctgtttgatgtctactgctttgctaagcagcttcaaggtgag
gtgttccactccactgtgcctgagaagctgagccttgccactgcttccacccactgccac
actctgggagcccagctggccactgtcggacagctttacctggcttggcaggctggcctg
gaccagtgtgaccctggctggctggcagatggcagcgtccgctatcccataaacgtcccg
cggaagaactgtggcggagacgaacccggggtgcggacagtctacaacaaccccaaccgc
accggcttcccagacaccaccgctctgttcgattccttctgctacagagctcatcagcca
gcaggaatccaggcttctgaggcaaaggctttacaccagaccagaccagctgcacaggag
ttgtctccagccccagaagcccaaagaaaatcccattccactgaaacacctgcctgggct
ggcttagttgactcaaacacaacaggactctcatttctcgtgagaataaacagctcatct
aggacctctgaagagcacatggtcaacttaaagcatgaagacggttgggacgaaagacaa
aatgaatccagaggaagtcaacatggccaggatgagactgatggttcaaaaagtaaccac
acctcgggtctatttgactttaaaatggcagagagccatggaggttctgcccaaaaggag
gaggattacagctactatgaatttgacacctcaaccccatcttctacaccactccctccg
acaggtagtagtatcctcaatggatttttgaataccctcatgtggcccttcaagtactgg
acagggagccaagaggcaaacgagacggcggggtcgccctcagcgcccgaggggggagct
ggagagaatcagggacaagaacaagcatctaacggaaacacaagtgtcccaaagcagagt
gaaatcaagagcatcacggacaacgctatattggagctgaaaagtggtactttctccctc
agaggtgccacaggtgagcagcagagcttagagaaggaactgtctgagcaggaaaaagag
ctcaggccactgattaaacttgtcccagctgtgccagagcaaagagggaatgaaggtgtt
gccaatacgtacaaacatcagtccgccctaaatgagttgcctgcatcaggtcatgtggag
aagtctctacccatcaagcaggtcaacgtatccagtcctcagagtcccaaatgggaccct
tccattgctcctgtggtccccagtgttcattttcagtgggccgtcaaggccatgcatggc
ccaaaacaggagctccctgaaaacgaggcttatgtagtcaaatatccttcatgggagccc
aaggaagctaaggcaggaccccttgaattgatcactctgcctaactcccatcaacaggaa
aacatggaaaactattcgggagaaggcaaggaagtgaattcagaaggtgttggtgctgta
gctgacagaggtggacctgcgtcaggagaagagaaagatgtggaagggagtggagatgag
agcagctttcctgctggctttgaaatgaatgtgcaaaatttgtccagtatcgttgtcaac
ttaagtcctaaaactgaattttctcccatcacgagtgattttgtgtccttggatgagcgc
accactcagcctcattggcagttggtagagcaatccactatctcacctcagggcctgctg
gaaccagcgacagcagaagaagccaaggaggaggttctctatgtccacaagcctactgac
aatctcttctctgactctcctgtgcaaacaactagtgaaagcaggagagaggagatggtt
acatcaacagaagcctcagcagaggttctgaccacttctgaggtgaccactgtagagatt
ttgtccgtaggtccacacaggacagatcttactactgaagcaataacaactgaaaatact
cccgagagctctgctatggaggagccatcaatctcaatttcatggattctggaagagaaa
gaggagattacaagtgtacctgatctggaagaacgcttctctgaaactctgacacccact
gaaagatcacaagctggagtttctcagtggaccaccattgcatcagtctcaggggttaca
gaaatggaatcaagatctgcagtatcagagtcctttgttgtaggaagtcattggacacct
ttcaaagagttgacttcgaaggaaccaaaagcctctgagacaacagagaacaaagactca
aacaacccttttggtagtcttgtacccaactgggcctttggcctcatctcatcagtggag
actaacccatgccagaccagcccctgtctccacggtgggagctgcctgcaggaaggtgat
ggctatagctgctattgtcctcagggtttctctggagagaactgtgagattgatattgat
gactgccagtctaatccgtgccagaatggaggaacctgcattgatgagatcaactctttt
gtgtgtctttgtctgcccagctatggaggagcgacgtgtgaaaaagacaccgagggctgt
gagcactcatggaggaagttccatggccactgttacaggtatttcagccgcagacacacc
tgggaggacgctgagaaggactgcagggaacacaacggccacctggccagcattcacagc
acagccgagcagaacttcatcagaggtctgagccatgataacacttggattgggctgaat
gatcgtacagtggaggatgactttcagtggacggacaagatggacctgcaatacgaaaac
tggcgtgaaaaccaaccggacaacttcttcgctggaggagaggactgtgtggttatgatt
gcccgtgaaaacggcaaatggaatgacgttccctgcaactacaacctgccttacgtctgc
aagaaaggaacagtgatttgtggaacccctcccactgtggataatgccttcctgattgga
cgaaagcgttcacactatgacatccactcagtagtgcgctaccagtgcactgacggcttc
ctgcagcgccatgtgcccacagctaagtgtcgtgccaatggcaagtgggaccgacctaaa
attatctgcataagatctcggcgagcccatcgttaccggcgccaccaccaccaccacaag
gggaagagggagcgccggaagcacaagaggcatggccatagacaggggggtcaccatgga
ggggagctcagccaggcccacagccacgcccacttctga
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integrated database retrieval system
