Nothobranchius furzeri (turquoise killifish): 107395421
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Entry
107395421 CDS
T05163
Symbol
xrn1
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
nfu
Nothobranchius furzeri (turquoise killifish)
Pathway
nfu03008
Ribosome biogenesis in eukaryotes
nfu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nfu00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
107395421 (xrn1)
09123 Folding, sorting and degradation
03018 RNA degradation
107395421 (xrn1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nfu03019
]
107395421 (xrn1)
03009 Ribosome biogenesis [BR:
nfu03009
]
107395421 (xrn1)
03016 Transfer RNA biogenesis [BR:
nfu03016
]
107395421 (xrn1)
03036 Chromosome and associated proteins [BR:
nfu03036
]
107395421 (xrn1)
Messenger RNA biogenesis [BR:
nfu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
107395421 (xrn1)
mRNA degradation factors
5'-3' decay
5' exonucleases
107395421 (xrn1)
Ribosome biogenesis [BR:
nfu03009
]
Eukaryotic type
Pre-60S particles
RNases
107395421 (xrn1)
Transfer RNA biogenesis [BR:
nfu03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
107395421 (xrn1)
Chromosome and associated proteins [BR:
nfu03036
]
Eukaryotic type
Gene silencing
piRNA pathway
107395421 (xrn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
SpoIIE_N
Motif
Other DBs
NCBI-GeneID:
107395421
NCBI-ProteinID:
XP_015830286
UniProt:
A0A1A7ZUV7
LinkDB
All DBs
Position
Unknown
AA seq
1707 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEHKIPEFDNLYLDMNGIIHQCSHPNDEDVHFRISDEKI
FADIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEEKIKKALEKGE
VLPTEARFDSNCITPGTDFMARLQEQLKYFVHNKISTDKLWQNVNVYLSGHETPGEGEHK
IMEFIRSENAKPNHDPNTRHCLYGLDADLMMLGLTSHEPNFSLLREEVRFGGKKSQKRIT
APEETTFHLLHLSLMREYIDYEFSELKYQMGSDYDLERIIDDWILMGFLVGNDFIPHLPH
FHINHDALPLLYKTYISVLPSLGGYLNENGHLNLRNFEKYLEKLSEFDREHFSEVFVDLK
WFESKVGNKYLNECAGLVAEEEAAAKGSKKSEDADLRLAALVSSGKKAGEGKEALGDDEE
EEDDLFETEFRQYKRTYYMTKMGVDVVSDEFLAEQARCYVEGIQWILHYYYHGVQSWSWY
YPYHYAPFLSDIKNISGLKLTFDLGKPFMPFQQLLAVLPAASKVLLPECYRDLMTSTNSP
IIEYYPLDFKTDLNGKQQEWEAVVLIPFIDERCLLAAMEPFNHKLTNEEKARNRHSECDL
YSYDGDLDFTYNSSLPHLFPSIINCHVKKVSIPMDTWKVPPGHIYKRADRSALYFCGFPT
LHHIKHKFYKKKSGVVVFQQSSRGENMMLELLPSQDGETVCEDVAAQVLGKPVFVNWPHL
EEARIIAVSDGETRFALEEPSGVQQVYDRSCSPPPSKVSHLSDKEQKEWVKDVQGITEHF
VKRKGIVVNNTEVLLYGQMMTGRKYVPKANGVVELEKQWAKQVLPFAYQTVVKDIKAFYS
SLTCFRSLAEFFPPTTPVFMVGTPYYGSMGEVQDSQDVIKDGRIRVVFSVPHEPQLEHLI
QNQHKYSVKYSPGYYLASRLGISSYLVSRFSGSIFIGRGSKKNPCGEQRANVGLNLKFNK
KNEEVPGYTKRTEKEWLYSASVQELLAEYLEKFSEVFDAVSRNSHDDVFYEDDIWPGEDE
NGAEKVAEITSWLKGHPVSSISRASCDLQVLDAAIVEKIEEAVERSKVKKSTKKVRVTVK
PHLLFRPLEQQLGVVPDPEAEYRLFDRVINIRESFTVPLGLRGTIIGIKGADVEAEVLYE
VLFDEEFAGGLNIRCVSPRGYRLPPCALINLSHGVRMDHTSHKLTAVVKPQPAAGIVFNS
HRQPAGLNHCPRSPFVPTQYNNKHVAAKSAAQSSNSPSKGLYQKQQPRTGEDYSNLWQSL
QKTGAPDKPPDHWNNDRENSQQANKAAPAGGIRLLKKHEDINSLLSQSSANKATTEFEDL
IASLKISKESQQTSPSAAPQQQPSSQSDGPLSPQSFALKGTMVLKEMLKIDGSGKGTPST
QESSNLSPPAGSQQQNRRRPSKKLAAKMNAPRSDAGTVPPPAPAANSVLTSKVSELACVC
VGLGMAPPDFSFIRNRQGLVVCQVKLSNGLMVHGPQCQSENDAKEKAAFFALQRLNSLGS
CFPLPPPLYPAVGQIRPPPMGAVAPVFNQQGGLLLPPQGYGPAPLWRMTLPPPNHPNQPF
YGAAGTFPSAARSQPTTTLPIGSHNQFIPLQVTKKRASANKKHQETREFYSAAQTVSQNL
SQKAQSQPPAQSKPQNSKNNQPHKNHANAVPLSCKSGLVDSVSTATAASPQTPPRQSMPA
TGHTSGSASRRKHRKLAVNFEAAKVSE
NT seq
5124 nt
NT seq
+upstream
nt +downstream
nt
atgggagtacccaaattttaccgatggatttcggagcgatatccttgtcttagtgaagtt
gtgaaggaacataagattccggaatttgacaatctctatctggacatgaatggcatcatc
caccagtgctctcacccaaatgatgaggatgtccatttccgcatctcagatgaaaagatt
tttgctgacatttttcattacttggaagtgctctttaggatcatcaagccacgcaaggtc
ttcttcatggctgttgatggtgtggcgccaagggccaagatgaaccagcagagaggccga
agattcaggtccgccaaagaggcagaggagaagattaaaaaagctttggagaagggagag
gtgcttccgacagaagctcgctttgactccaactgtatcactcccggcactgatttcatg
gcaagactgcaggaacagcttaagtactttgttcacaacaagatctccactgacaagctg
tggcagaatgtcaacgtctacctgtctggtcacgagacacccggtgagggagaacacaag
atcatggagtttattcgttctgagaacgccaagcccaatcatgaccccaacacccgacac
tgcctgtatggcctggatgccgacctgatgatgttaggtttaaccagccatgagcctaat
ttctccctgcttagagaagaagtccgctttggaggaaagaaatcccagaagaggataacg
gctccagaggagaccacttttcatctgcttcacttgtctctgatgagagagtacatagac
tatgagttctcagagctaaagtatcagatgggctctgattatgacctggagcgcataata
gacgactggattctaatgggcttccttgtaggaaatgatttcatccctcatctccctcat
tttcacattaatcatgacgctttaccgttgctgtacaagacttacatcagtgtgctgccc
agcctggggggttatctgaatgagaacggccacttaaacctcagaaactttgagaaatac
ctggagaaactttctgagtttgaccgagaacatttcagtgaagtatttgtggacttgaag
tggtttgagagtaaagtgggcaacaaatatttgaacgagtgcgccggtctagtggctgaa
gaggaagctgccgccaaaggcagcaaaaagagcgaggatgctgaccttcgtctcgccgct
ttagtatcatctggaaagaaggccggagaaggaaaagaagcgttgggggatgacgaggaa
gaggaagacgacttgtttgagacagagttcagacagtacaaacgcacctactacatgacc
aagatgggtgtggatgtggtgtctgacgagtttctcgcagaacaagccaggtgttacgtg
gaaggtatccagtggattcttcactactactatcatggtgttcagtcctggagctggtac
tacccataccattacgctccgttcctgtccgacatcaaaaacatatcagggttgaagctg
acctttgacctcgggaagccctttatgcctttccagcagctgttggcagtcctgcctgca
gctagcaaggttctgctgcctgagtgctacagggatctgatgacgagcacaaactccccc
atcattgagtattatcctctagactttaaaacggacctcaacggcaagcagcaggaatgg
gaagctgtggtgctcattccatttatagacgagaggtgcctgctagcagctatggagccc
ttcaaccacaagctgacaaatgaagagaaagccaggaatcggcattcagagtgtgacttg
tactcgtatgatggagatttagacttcacgtacaactcctccctgcctcacctgttcccc
agcatcataaactgccatgtcaagaaagtcagcatcccgatggacacgtggaaagttcct
cctggtcacatctacaagcgcgctgaccgctcggcgctctacttctgtggtttccctact
ttgcaccatatcaaacacaagttctataagaagaagagtggcgttgtagtcttccagcag
agcagcagaggggagaacatgatgctggagcttctccccagtcaggacggggaaacggta
tgtgaagatgttgctgcacaagtcctggggaagcctgtttttgtcaactggcctcatcta
gaggaagctcgcatcattgcagtgtcagatggagaaaccagatttgctctggaggaacct
tctggagtccaacaggtgtacgaccgctcatgcagtcctcctccctctaaagtctcccat
ttgtctgacaaggagcagaaggaatgggtgaaggatgttcagggaatcaccgaacatttt
gtgaagagaaaaggcatcgtagtgaacaacacagaagtgcttttatacggccagatgatg
acggggagaaaatatgtccctaaagccaatggagtggtggagctggagaaacagtgggcc
aaacaagttctgccttttgcttaccagactgtggtgaaggacatcaaggccttttactcg
tctctgacctgcttcaggagcttagccgagttctttcctccaaccactccagtcttcatg
gtgggaactccgtactacggctccatgggggaggtgcaggattctcaagatgttatcaaa
gacggtcggatcagagtggtgtttagtgttcctcatgagccacagctggagcatttgatc
cagaaccaacacaaatactctgtgaagtactctccgggctactacctggcttctcgtctt
ggtatcagcagctatctcgtctctcgcttctcgggcagcatcttcatcggcagaggctcc
aagaagaacccctgtggagaacaacgagccaatgttggactgaacctgaagttcaacaag
aagaacgaggaggttcctggatacaccaagaggaccgagaaggagtggctgtactctgct
tctgttcaggagctgctggctgaatacctggaaaaattttcggaagtgtttgatgccgtg
tccagaaacagtcatgatgatgttttctatgaggatgacatctggcctggagaggacgag
aacggggcagagaaggtggctgaaatcacctcgtggctgaaaggtcaccccgtcagctcc
atcagcagggcgtcatgtgacctccaagtgttggatgctgccatcgtagagaaaatcgag
gaagcggtggaaaggtcaaaggtgaagaaaagcactaagaaagtccgcgtgacggtcaag
cctcatctcctcttcaggccattggagcagcagctgggtgttgttcctgaccctgaggct
gaatatcgcctatttgacagagtcatcaacatcagggagagtttcactgtcccactgggg
ctcagagggacgatcatcggcatcaaaggagcggacgttgaggcagaggttctctacgaa
gtgctgtttgatgaggaatttgctggaggtctcaacatcagatgtgtgtctcctcgtggt
taccgcctccctccctgcgcactgattaacctttcccatggagttcgtatggatcacacg
tctcacaaactcaccgccgttgtcaaaccgcagcctgctgccggcatcgttttcaactct
catcggcagccagcgggcctcaaccactgtcctcgctcgccgtttgtgcccacgcagtac
aacaacaagcatgttgcagccaagtctgcagctcagagcagcaactcgccctctaagggt
ctctaccagaaacagcagcccaggactggagaggactacagcaacttgtggcagtctctg
cagaagacaggcgctccggacaaacctccagaccactggaacaatgatagagaaaattct
caacaggccaacaaagctgctccagctggaggcatcaggctgttaaagaaacatgaagac
atcaactcactcctgtcacagagctctgctaataaggctacaactgaatttgaggacctg
attgccagtttaaagatctctaaggaaagccagcagacctcaccatcagctgcacctcag
cagcagcccagcagtcagtccgatggcccgttgtccccacagtcctttgccctgaaggga
accatggtgctgaaggagatgctaaagatcgacggctctggaaaaggaactccatcaact
caagagtcaagcaacctctcccccccagctgggagccagcagcagaacagacggcgcccg
tctaagaaactcgctgcaaaaatgaacgctcctcgcagtgacgcaggtacggtaccccct
ccagcaccagcggcgaactcggtgctgaccagtaaggtgtcggagctggcttgtgtctgc
gtggggctggggatggcccctcctgacttcagcttcatacggaacagacagggtctggta
gtgtgtcaggtgaagctgtccaacgggttgatggttcatggaccacagtgccagtcggaa
aatgacgccaaggagaaagctgccttctttgccctacagagactgaactccttggggtct
tgtttccccctcccacctcctctgtacccggctgtgggtcagatcagacccccgcccatg
ggagccgtggcgcctgtctttaaccagcaaggtggcttacttttgcccccccagggttat
ggtcccgcccctctttggaggatgactctacctcctcccaaccacccaaaccagccgttt
tatggagcagcagggaccttccccagcgctgcccgctctcagcccacgaccactctgccc
attggctcacacaaccagttcatcccattacaggtgaccaaaaagcgagcatcggccaac
aaaaagcatcaggaaacccgagagttttacagcgccgcccaaactgtctcccaaaatctg
tcccagaaagcccaaagtcagccgccagctcagagcaaaccacagaacagcaaaaataac
cagccacacaagaaccacgccaacgccgtcccattatcatgcaaatctggtttagtagac
agcgtttccacggcaacagcagcatccccgcaaacaccacctcgacaaagcatgcctgca
acaggccacacttctggctccgcctctaggaggaagcacaggaagttggctgttaacttt
gaggctgctaaagtgtctgagtga
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integrated database retrieval system
