Nannospalax galili (Upper Galilee mountains blind mole rat): 103746065
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Entry
103746065 CDS
T03372
Symbol
Lig3
Name
(RefSeq) DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
ngi
Nannospalax galili (Upper Galilee mountains blind mole rat)
Pathway
ngi03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ngi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
103746065 (Lig3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ngi03400
]
103746065 (Lig3)
Enzymes [BR:
ngi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
103746065 (Lig3)
DNA repair and recombination proteins [BR:
ngi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
103746065 (Lig3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
103746065
NCBI-ProteinID:
XP_008846375
LinkDB
All DBs
Position
Un
AA seq
1013 aa
AA seq
DB search
MSLAFRILFPQNLRALGQKELHLFQEQYHQPAIRQFSHWSQTDPLRAPCLLQRRKPLSFQ
GHHLRSRATRLVFLSWSHVGLCSGPSEMAEQRFCVDYAKRGTAGCKKCKEKIVKGVCRIG
KVVPNPFSESGGDMKEWYHIKCMFEKLERARATTKKIEDLTELEGWEELEDNEKEQITQH
IADLCCKAANTPKKKAVVQAKLTATGQVTSPVKGASFVTNTNPRKFSGFSAKPNNSEQAP
SSPTCKTSLSARKCDPKHKDCLLREFRKLCATVADNPSYNTKTQIIQDFLRKGSAGDGFH
GDVYLTVKLLLPGVIKSVYNLNDKQIVKLFSRIFNCNPDDMARDLEQGDVSETIRVFFEQ
SKSFPPAAKSLLTIQEVDEFLLHLSRLTKEDEQQQALQDIASRCTANDLKCIIRLIKHDL
KMNSGAKHVLDALDPNAYEAFKASRNLQDVVERVLHNEQAEEKDPGQRRALSVQASLMTP
VQPMLAEACKSIEYAMKKCPNGMFSEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAH
FKDYIPQAFPGGHSMILDSEVLLIDNNTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYF
NDVSLMDRPLCERRKFLHDNMVEIPNRIMFSEMKRVTKASDLADMINRVIREGLEGLVLK
DVKGTYEPGKRHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPSS
QKWCTVTKCAGGHDDATLARLQKELDMVKISKDPSKIPSWLKINKIYYPDFIVPDPKKAA
VWEITGAEFSKSEAHTADGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLSKEKADFTV
VAGDEGSSTTGGSSGENEGTVGSAVPRKAPKALPNKSSASAKPERKPNNPSSKGGNKQTI
NPSFVKPGEKLAMKSPVKVGVKRKATAETPGPRKVQVLLDVFTGVRLYLPPSTPDFSRLR
RYFVAFDGDLVQEFDTASATHVLGSREKNPDAQLVSPEWIWACIRKRRLIAPC
NT seq
3042 nt
NT seq
+upstream
nt +downstream
nt
atgtctttggctttcaggatcctctttccgcaaaaccttcgtgcacttggccaaaaagaa
ctccacctgttccaagaacaatatcaccagcctgccataagacagttcagtcattggtca
caaacagatccacttcgtgctccctgcctcctccagagaagaaagcccttgtcattccaa
ggacaccatctaagatcacgtgccacccgccttgttttcttgtcttggtcgcatgtggga
ctctgcagtggcccctctgagatggccgagcagaggttctgtgtggactatgccaagcgg
ggcacagctggctgcaaaaaatgtaaggagaagattgtgaagggtgtatgccgcattggc
aaagtggtgcccaatcccttctcggagtccggaggcgatatgaaagagtggtaccacatt
aaatgcatgtttgagaaactggaacgcgcacgggccaccacaaaaaaaatcgaagatctt
acagagctggaaggctgggaagagctggaagataatgaaaaggagcagatcacccagcac
attgcagatctgtgttgtaaggcagcaaacacaccaaagaagaaagctgttgtccaggct
aagttgacagccactggccaggtgacatccccagtgaaaggtgcttcgtttgttaccaat
accaatccccggaaattttctggcttttcagccaagcccaacaactctgagcaagccccc
tccagccctacatgtaagacaagtctttctgcgcgcaagtgtgaccccaagcacaaggat
tgcctgctacgtgagttccggaagctgtgtgctaccgtggctgataaccctagctacaac
acaaagacacagatcatccaggacttcttgcggaaaggctcagcaggagatggcttccat
ggtgatgtgtacctgacagtgaagctgctgctgccaggagtcattaagagcgtttacaac
ttgaatgataagcagattgtgaagcttttcagccgcatttttaactgcaacccagatgat
atggcccgcgacctagagcagggtgacgtgtcagagacaatcagagtcttctttgagcag
agcaagtcttttcccccagctgccaagagcctcctcaccattcaggaagtggatgaattc
ctcctgcacctctccaggctcacaaaagaggatgagcaacagcaggccctgcaggacatt
gcctccaggtgtacagccaatgaccttaagtgcatcatccggttgatcaaacatgatctg
aagatgaactcgggtgcaaaacatgtgttagatgcccttgaccccaatgcttatgaagcc
ttcaaagcctcacgaaacctacaggatgtggtggaacgggtacttcacaatgagcaggcg
gaggagaaggacccaggccagcgacgggctctgagtgtccaagcctcattgatgacacct
gtgcagcccatgctggcagaggcctgcaagtccattgagtatgcgatgaagaaatgtcca
aacggcatgttctctgaaatcaagtatgatggtgagcgagtccaggtacataagaacggg
gaccacttcagctacttcagccgtagtctcaagcctgtcctgcctcacaaggtggctcac
tttaaggactacatcccccaggcttttcctgggggccatagcatgatcttggactccgag
gtgctcctgattgacaacaacacaggcaaaccactgccctttgggactctgggggtgcac
aagaaagctgccttccaggatgctaatgtctgcctgtttgtttttgattgtatctacttt
aatgatgtcagcttgatggacaggcctttgtgtgagcggcggaagtttcttcatgacaac
atggttgaaatccctaaccggatcatgttctcagaaatgaagcgagtcacaaaagcctca
gacttggcggacatgataaatcgggtgatccgggagggtttggaagggctggtgctgaag
gatgtgaagggtacatacgaacctgggaagcggcactggctgaaagttaagaaagattat
ttaaatgaaggggccatggctgacacagctgatctggtggttcttggggccttctacggg
caaggaagcaaaggcggcatgatgtccatcttcctcatgggctgctatgaccctagtagc
cagaagtggtgcaccgtcacaaagtgtgctggaggccatgatgatgccacacttgcccgc
ctgcaaaaggagctagatatggtgaagatcagcaaggatcctagcaagatacccagttgg
ctgaagatcaataagatctactatcctgactttattgttccggacccaaagaaggctgct
gtgtgggagatcacaggggcagaattctccaaatctgaggctcacactgctgatgggatc
tccatacgatttccacgctgcaccagaatccgggacgataaggactggaaatctgcaact
aacctcccccaactcaaggagctgtaccagctgtccaaggagaaggcagacttcaccgta
gtggccggagatgaagggagctccactactggaggcagcagtggtgagaatgagggcact
gttgggtctgctgtgccccgcaaggcccccaaagcactccccaataagtcctctgccagt
gccaagcctgaacggaagccgaataaccccagcagcaaaggcggcaacaagcagactata
aatccttcctttgtaaaacctggagagaagctggccatgaagtccccagtaaaagtgggg
gtgaagaggaaagctactgctgagactccaggcccaagaaaggtgcaagtgctgttggat
gtcttcactggggtacggctctacttaccaccctccacaccagacttcagccgtctcaga
cgctattttgtggcattcgatggggacctggtgcaagaatttgacacagcctcagccaca
catgtgctgggtagcagagagaagaaccctgatgcccagctagtctccccagagtggatt
tgggcctgtatccggaaacggagactgatagctccctgctag
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