Nitrobacter hamburgensis: Nham_0448
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Entry
Nham_0448 CDS
T00348
Name
(GenBank) ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD phosphoesterase module
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
nha
Nitrobacter hamburgensis
Pathway
nha03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Nham_0448
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nha03400
]
Nham_0448
Enzymes [BR:
nha01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Nham_0448
DNA repair and recombination proteins [BR:
nha03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Nham_0448
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Hjc
Motif
Other DBs
NCBI-ProteinID:
ABE61338
UniProt:
Q1QR09
LinkDB
All DBs
Position
complement(493562..496162)
Genome browser
AA seq
866 aa
AA seq
DB search
MHDATRLHYDFRLEYDGVFKSWAVTRGPSLDPAEKRLAVEVEDHPLDYGDFEGTIPKGQY
GGGTVEIWDRGYWYADDPAKGLAKGDLKFALMGEKLKGEWVLVRMKHDRSGGKRTNWLLI
KHRDDYAKPGTGEEVLKHDRSVASGRTLRQIAEGKGKAPEPFMMTRRIAGSDAVWDSNKG
VAAKARDRNSKHSAVKTSAKPASARKRLPTKAKANAIKSEMPDFAGLQLCKTSTRPPSAD
GWVHEIKFDGYRIQMRIENGDVTLKTRKGLDWTDKFPAIASAATKLPDAIIDGEIVALNQ
HGDPDFSAMQAALSEDKTDELVFFAFDLLFAEGEDLRPLSLLARKERLRQLLGRSAKSAR
ASIRYVEHFDADGAQVLDTAREAGLEGIISKRADEPYRAGRGGSWLKSKSRAGHEVVIGG
WKTTSGKFRSLMAGVYNGDYLVYTGIVGTGYGRDTVKRIMPALKAAAASKSPFSGNNAPP
GGPEVHWLKPELVAEIEFAGWTADGMVRQAAFKGLRADKPAREVKAEAPSHATVPRLNAT
RLAASAAAAARADTTTSRQPRAPAARDRSTVMGVAISHPDKALWPDAGDKQPVTKRDLAA
YMETAGDWIIQHIRGRPCSIVRAPDGIGGETFFQRHAMPGLSDLVTEVKVSGDRKPYLQI
DRVEGLIAVAQIGGLELHPWNCAPDQYDVPGRLVFDLDPAPDVAFPDVIAAAKEMKQRLE
TLGLETFCKTTGGKGLHVVTPLAITQKNRLNWKQAKMFAQAVCEQMATDTPDKYLITMSK
KQREGKIFLDYLRNDTKSTAVAPLSPRARPGATVSMPLNWSQVKAGLDPKRFTLRTAPDL
LKKSKAWSGYDEAARPLAAAIGKLVR
NT seq
2601 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacgccacccggctgcattacgacttccgtctcgaatatgacggggtgttcaag
tcctgggcggtgacgcgcggcccctcgctcgatccagccgagaagcggctggcggtggag
gtcgaggatcacccgctcgactacggcgacttcgagggtaccatcccgaaaggccagtat
ggcggcggcaccgtggagatctgggaccgcggctattggtatgccgacgatccggcgaag
ggtctcgccaagggcgacctcaaattcgcgctgatgggcgagaagctcaaaggcgaatgg
gtactggtgcgcatgaagcacgatcgcagcggcggcaagcgcaccaactggctgctgatc
aagcaccgcgacgactatgccaaacccggcacgggcgaggaggtactgaagcacgaccgc
tcggttgcgtcggggcgaacgctcagacagatcgcggagggcaagggcaaggcaccggag
ccattcatgatgaccagacggatcgccggttcggatgcggtgtgggattcaaacaagggc
gttgctgccaaggcgcgcgacaggaactcgaaacattcagcggtaaagacgagtgccaaa
cctgcttcagcccgcaagcgattaccaacgaaggcgaaggccaacgcgatcaagagcgag
atgccggacttcgccgggcttcaactctgcaagacgtcgacgcgcccgccgtcggcggac
ggctgggtgcatgagatcaaattcgacggctaccgcatccagatgcggatcgagaacggt
gacgtgacgctcaaaactcgcaagggcctcgactggaccgacaagtttccggccatcgca
agcgcggctacgaaattgcccgacgccatcatcgacggcgagatcgttgcattgaaccaa
catggcgatccggacttctcggccatgcaggccgcgctgtccgaagacaagaccgacgaa
ctggtgttctttgccttcgacctgctgttcgccgagggtgaggatttgcgcccgctgtcg
ctgctcgcgcgcaaggaacggcttcgtcaattgctgggacgttctgcaaaatcagcccgt
gcgtcgatccgctacgtcgaacatttcgatgccgatggcgcgcaggtcctggacaccgcg
cgtgaggcgggacttgagggcatcatctcaaaacgggccgacgagccctatcgcgccggc
cgcggcggaagctggctcaagagcaaaagccgcgccggccatgaggtggtgatcggcggc
tggaagacgacaagcggaaaattccgctcgctgatggccggcgtctacaacggcgactac
cttgtctatactggaatcgtcggcaccggctacggccgcgacactgtcaagcgcatcatg
ccggcgctgaaggcggctgccgcctcgaagagtccattctccggcaacaacgcaccgccg
ggcggtcccgaggtgcattggctgaagcctgaactcgttgccgagatcgaattcgccggc
tggaccgccgacggcatggttcggcaggcggccttcaagggattgcgcgcagacaagccg
gcccgcgaggtcaaggcggaggcgccgtcccatgcgacggtcccaaggctcaacgcgaca
aggctcgccgcgagcgctgcggccgcagcgcgcgctgatacgacgacatcgcgccagccg
cgcgcacctgcggcgcgggatcgctcgacggtcatgggcgttgcgatctcgcacccggac
aaggcgctgtggccggatgccggcgacaagcagccggtcaccaagcgcgaccttgccgcg
tacatggaaacggccggcgactggatcatccagcacatccgcgggcggccgtgttcgatc
gtgcgcgctcccgacggcatcggcggcgagaccttcttccagcgtcacgccatgccgggc
ctgtccgatctcgtcaccgaagtgaaggtgtccggcgaccggaagccttatctgcagatc
gaccgcgtcgaaggcctgatcgcggtggcgcagatcggcgggctcgaactgcatccgtgg
aattgcgcgcccgatcaatatgacgtgccggggcggctggtgttcgacctcgatccggcg
ccggacgtcgcattcccggatgtgatcgcggctgccaaggagatgaagcaacgcctcgag
acgctcgggcttgaaaccttctgcaagaccaccggcggcaagggcctgcatgtggtcacg
ccgcttgcaatcacgcagaagaacaggttgaactggaagcaagccaaaatgttcgcgcag
gccgtctgcgaacaaatggcaaccgatacacccgataaatatctcatcaccatgtcgaag
aagcagcgcgagggcaaaatctttctcgattatcttcgcaacgacaccaaatcgaccgcg
gtcgcgcctctgtcgccgcgcgcgcgccctggcgccaccgtgtcgatgccgctgaactgg
tcgcaggtgaaagccggcctcgatccgaaacgcttcacgctccgcaccgcgccggacctc
ctgaaaaagagcaaggcctggtcgggctacgacgaggccgcgcgtccgctggccgctgcg
atcggaaagctggtccgatga
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