Nitrobacter hamburgensis: Nham_3852
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Entry
Nham_3852 CDS
T00348
Name
(GenBank) ATP dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
nha
Nitrobacter hamburgensis
Pathway
nha03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nha00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Nham_3852
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nha03400
]
Nham_3852
Enzymes [BR:
nha01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Nham_3852
DNA repair and recombination proteins [BR:
nha03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Nham_3852
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
ABE64555
UniProt:
Q1QGU2
LinkDB
All DBs
Position
complement(4231992..4232939)
Genome browser
AA seq
315 aa
AA seq
DB search
MVERTKSRAKQRTGGTRPTAMPGFIKPQLATLRTNAPRQSGYLHEIKYDGYRVQLHLDQG
RGKAYTRNGLDWTKRFSEIVAAFDIPGQAIVDGEVVVVHEGRTNFSELQADLARGDQSRL
LYYAFDLLWLDGRDLRNTPQVERKALLKELFDTYALKAPALYSEHLEGDGQALFEHAAKL
NYEGIVSKKAAAPYRSGRNDNWLKVKTVQRGKFPVVGFIKDPSGIAALYLGRREGKQLVY
MGKVGTGWSRTTSSSIRKALDQVVSPKSKLSKPLRKPKATWVEPVFTAEVEYRDITSEGL
LRASSFKGLTRQSKS
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
atggtagagcgtacaaaatcgcgggcgaagcagcgcaccggtggcaccaggcccacggcg
atgccgggattcatcaagccgcagctggcgacgttgcgcacaaatgcgccgcgacaaagt
ggctatctccatgaaatcaaatacgacggctaccgcgtgcagctgcacctcgaccagggc
aggggcaaggcctacactcgcaatgggctcgactggacgaagcgcttttcagagattgtc
gccgcgttcgacatccccggtcaggccatcgtggatggggaggtcgtggttgtccatgaa
ggccgcacgaatttctccgagctgcaggcagacctcgccagaggcgaccagagccgtttg
ctgtattacgcctttgacctgctgtggctggatggccgagacctacgcaacacgccgcag
gttgagcgcaaggcgctgctcaaggagctgttcgacacttacgcgctcaaggcccccgcg
ctctacagcgagcatctggaaggggacggccaggcattattcgagcacgccgcaaagctc
aactacgagggcatagtctcgaagaaggccgccgcgccatatcgctccggccgcaacgac
aactggctcaaggtcaaaaccgttcagcgcggcaaatttcccgtggtgggattcatcaaa
gaccccagcggcattgccgcgttgtatctcggcaggcgcgagggcaaacaactcgtttac
atgggcaaggtcggcacgggctggagccgcacgacatcaagcagcatcaggaaggccctc
gaccaggtcgtgagcccgaaaagcaagctgagcaaaccgctcaggaaacccaaggcgacg
tgggttgaacctgttttcacggcagaggttgagtaccgtgacatcacctccgagggcctg
ctgcgcgccagctcgttcaaggggctgacgaggcagagcaagagctga
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