Nocardia iowensis: KV110_04130
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Entry
KV110_04130 CDS
T07470
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
nie
Nocardia iowensis
Pathway
nie03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nie00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
KV110_04130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nie03400
]
KV110_04130
Enzymes [BR:
nie01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
KV110_04130
DNA repair and recombination proteins [BR:
nie03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
KV110_04130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QXN92351
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All DBs
Position
869773..872112
Genome browser
AA seq
779 aa
AA seq
DB search
MAARREFGGIEVELSNLDKVLYPATGTTKGEVIAYYSAIAPAMLPHIAGRPVTRKRWPNG
VDEPSFFEKNLPAHAPSWIERHTIQHSDRTVTYPVINSEAGLAWLGQQAALEVHVQQWRF
NGDEVGPATRVVFDLDPGPGAELADCARVALAVRDMIEDIGLHAFPVTSGSKGIHIYVPL
DRAVRSSGASTVAKQVATNLERLHPDLVTATMAKSARGGKIFLDWSQNNASKTTIAPYSL
RGRAQPNAAAPRAWKEIENRKKLRHLRFDEVLARWQDDGDLLADLDPPLPKGNTASAESG
ADALAKYRSMRDPARTPEPVPADRPAPGAGNRYVVQEHHARRLHWDVRLERGGVLVSWAV
PKGPPTSTDQNRLAVHTEDHPLEYLDFHGAIPKGQYGAGEMTIWDHGTYETEKWRDDEVI
VQFHGERLNGRYALIQTNGNQWLMHLMREQRTDGAGPNGADKSTNAPGNEPSRPSGRIIR
VSSGPSPFPRGLSPMLATPGDVADLTPDEWCFETKWDGFRLIAEIDSGTLTLRSRQGIVV
NKRYPGMAVLAEELAGHNVVLDGEAVVFDDHGVANLGLLQADAARAVFVAFDVLYLDGTS
LVRKRYSDRRRVLEALAGTAPSMVVPPRLDGSGADAVRYSQEHGMEGVVAKRKDSVYLPG
KRGHSWVKQRNWRTQAVVIGGWRRSDARNFKSLLVGIPYEGRLIYVGRVGTGFNDADMRE
LAKRLNKLERKTNPFDNSLTAEERKEAVWVTPKIPGTVRFMNWTETGRLWHPAWLGTSD
NT seq
2340 nt
NT seq
+upstream
nt +downstream
nt
atggcggcccgccgggagttcggtggtatcgaggttgagctgagcaacctcgacaaggtg
ctgtatccggccaccggcaccaccaaaggcgaagtcatcgcctactattcggcgatcgcc
cccgcgatgcttccgcacatcgccgggcgcccggtcaccaggaagcgctggcccaacggg
gtcgacgagccgtccttcttcgaaaagaatctgcccgcacacgcgccgtcgtggatcgaa
cggcacaccatccagcactccgaccgcacggtcacctacccggtaatcaattccgaggcc
ggactcgcctggctcggtcagcaggcggcgctggaagtccatgtccagcaatggcgtttc
aacggggacgaagtgggtccggcgacccgggtggttttcgacctcgaccccggccccggc
gcggaactggcggattgcgcgcgcgtcgcgctcgcggtacgcgacatgatcgaggacatc
ggcctgcacgcgttcccggtgaccagtggcagcaagggcattcatatctacgtcccgctg
gaccgtgcggtgcgctcgagcggcgcgtccaccgtggccaaacaggtggccacgaatcta
gaacggctgcacccggatctggtcaccgcgacgatggcgaaatcggcgcgcggcgggaag
atcttcctcgactggagccagaacaacgcgtccaagacgaccatcgcgccgtactcgctg
cgcggccgggcgcaacccaatgcggccgcgccacgcgcgtggaaggaaatcgagaaccgg
aagaagctgcggcacttgcggttcgacgaggtacttgcccgctggcaggacgacggcgac
ctgctcgccgacctcgatccgccgctgccgaagggcaataccgcgtccgcggagtccggg
gccgacgcgctggcgaagtatcggtcgatgcgtgacccggcccggacgcccgagcccgtt
ccggccgaccggcccgcgccgggggcgggcaatcgctacgtcgtgcaggaacaccatgcg
cggcggctgcattgggatgtccggttggaacggggcggggtgctggtctcctgggccgtg
ccgaagggaccgccgacctccacggatcagaatcggctcgccgtgcacaccgaggaccat
ccgctggagtacctggatttccacggcgccatcccgaaggggcagtacggcgcgggggag
atgaccatctgggatcacggcacctacgagaccgagaagtggcgcgacgacgaggtgatc
gtccaattccacggggaacggctcaacgggcgctacgcgctgatccagaccaacggcaac
cagtggctgatgcacttgatgcgggagcagcggaccgacggagccggtccgaacggcgcc
gataagtccacgaacgcaccgggtaacgagcccagccgaccgtccggccggatcatccgg
gtgtccagcggtccgtcgccgttcccgcgcgggctgtcgcccatgctggccacccccggc
gacgtcgccgacctgacgcccgacgaatggtgcttcgagaccaagtgggacggcttccgg
ctgatcgctgaaatagattccggcacacttactttgcgtagtcggcagggcatcgtggtg
aacaagcggtacccggggatggcggtgctcgcggaggagttggcggggcacaatgttgtc
ctggacggtgaagcggtggtgttcgacgaccacggcgtcgccaatctcggtctgctgcag
gccgatgcggcacgcgcggtattcgtcgccttcgacgtgctgtatctggacggcacttcg
cttgtccgcaaacggtattcggatcgccgccgagtgctggaggcacttgccgggaccgcg
ccctcgatggtcgtgccgccgcggctggacggttccggcgccgacgcggtgcgctacagc
caggaacacggcatggaaggcgtcgtcgccaagcgcaaggattcggtgtatctgcccggc
aaacgcgggcattcctgggtgaagcagcgcaactggcgcacccaggcggtggtcatcggc
ggctggcggcgcagcgacgcacggaatttcaagtcactgctggtcggcatcccgtacgaa
ggcaggctgatctatgtcggccgagtcggcaccggattcaatgacgcagacatgcgggaa
ctggccaagcggctgaacaaattggagcgcaaaaccaacccgttcgacaacagcctgacc
gccgaggaacgcaaggaagcggtctgggtgaccccgaaaatccctggcacggtgcgcttc
atgaactggaccgagaccgggcgcctgtggcacccggcgtggctgggcacctcggactga
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