Nitrincola iocasae: F5I99_09520
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Entry
F5I99_09520 CDS
T06212
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
nik
Nitrincola iocasae
Pathway
nik03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nik00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
F5I99_09520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nik03019
]
F5I99_09520
Enzymes [BR:
nik01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
F5I99_09520
Messenger RNA biogenesis [BR:
nik03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
F5I99_09520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
UTP25
CMS1
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QEW06723
UniProt:
A0A5J6LE56
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All DBs
Position
2035418..2036761
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AA seq
447 aa
AA seq
DB search
MSQFSKLNLCPELQFTLTQMGYTSATPIQTQAIPLILSGQDLVAEAQTGTGKTAAFALPM
IERLKQPVITEGYHAIRGLVLTPTRELAIQVGDKTLAYGQHLGMRVISIYGGVRFDNQLR
KMKCGADILVATPGRLLDMLKQGKLSLAQLEILVLDEADRMLDLGFIDAIRQLMSFMPKQ
RQTLLFSATLDASVDALSEALLQAPVHISTTERNSAAKSVQQRAFAVDNQDKSDVLSYLI
AGCNWSQTLVFTRTRKRADLVAAYLNQEQISAVAIHGEKLQRERNAALTAFTQNEVRVLV
ATDVAARGLDIASLPQVVNYDLPNQPEAYVHRIGRTGRAGKSGLAISLVAPDERRYLDAI
SSLIGKPILVEAVPMISQGKLQQGRKATAQTHKPGKSGNKRSTPSKKAMKSSPSKQPAGK
SVRPTPSSSKAEPSAKDKAGRGSLFGR
NT seq
1344 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaattttcaaagcttaacctttgccctgaactgcaattcacactgacgcagatg
ggctacacctcagccaccccgattcagacgcaggctatcccgctgattttgtccgggcag
gacctggtcgccgaggcacaaaccggcacaggtaaaaccgctgcgttcgccctacccatg
attgagcgcctgaaacaaccggtgattaccgagggctatcatgccatccgcggactggtg
ctaacgccgacgcgagagctggctatccaggtgggcgataaaaccctggcctatggtcag
catctgggcatgcgggtgatctcgatttatggcggcgtccgctttgacaatcaactgcgc
aaaatgaaatgcggtgccgacatactggtggccacaccaggtcgactactggatatgctt
aagcagggcaagttatcactggcacagctagagatactggtgctggatgaagccgaccgg
atgctcgatctgggctttattgatgccatccgccaactcatgtcttttatgcccaagcag
cgtcagactctgctgttttccgctactctggatgcctccgtggatgcactgagtgaagca
ctactgcaagcaccagtgcatatcagcacgactgagcgtaacagtgccgcaaaatctgta
cagcaacgcgcttttgcagtggataatcaggataaatccgatgtactcagctacctgatt
gctggctgcaactggtcacagacactagtatttacccgcacccgcaaacgcgccgacctg
gtggcagcctatctgaaccaggagcagatatcagctgtagccattcacggtgaaaaactg
cagcgagagcgtaatgccgccctgactgcatttacccagaatgaggtgcgcgtcctggtg
gccacagatgtagccgcacgcggtctggatatcgcctcactgcctcaggtggttaattat
gacctgcctaaccagccagaagcttatgtgcaccgtattgggcgtaccggacgtgccggc
aagtccggccttgccatttctctggtagcacccgatgagcgtcgttatctggatgctatt
tccagtctgatcggcaagccgattttagtggaagctgtgccgatgatatcgcaaggcaag
ctgcaacagggacgaaaagccactgctcagacccacaagccgggcaagtcaggcaataag
cgctcaacaccctcaaaaaaagcaatgaagagctcgcccagcaaacagcctgccggaaaa
tcagtacgccctaccccatcttccagcaaggcagaaccctcggccaaggataaggccgga
cgcggatctttgtttgggcgttaa
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