Candidatus Nitrosopumilus sediminis: NSED_07410
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Entry
NSED_07410 CDS
T02303
Name
(GenBank) D-alanine--D-alanine ligase
KO
K01921
D-alanine-D-alanine ligase [EC:
6.3.2.4
]
Organism
nir
Candidatus Nitrosopumilus sediminis
Pathway
nir00470
D-Amino acid metabolism
nir01100
Metabolic pathways
nir01502
Vancomycin resistance
Brite
KEGG Orthology (KO) [BR:
nir00001
]
09100 Metabolism
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
NSED_07410
09160 Human Diseases
09175 Drug resistance: antimicrobial
01502 Vancomycin resistance
NSED_07410
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
nir01011
]
NSED_07410
Enzymes [BR:
nir01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.2 Acid-D-amino-acid ligases (peptide synthases)
6.3.2.4 D-alanine---D-alanine ligase
NSED_07410
Peptidoglycan biosynthesis and degradation proteins [BR:
nir01011
]
Precursor biosynthesis
Amino acid ligase
NSED_07410
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Dala_Dala_lig_C
ATP-grasp_4
Peptidase_M20
ATP-grasp_3
CPSase_L_D2
RimK
ATP-grasp
GARS_A
ATPgrasp_Ter
ATPgrasp_ST
Motif
Other DBs
NCBI-ProteinID:
AFS83276
UniProt:
K0BG42
LinkDB
All DBs
Position
complement(1244050..1246218)
Genome browser
AA seq
722 aa
AA seq
DB search
MKVALIYNETQIDPNDVINVFGMTTKEHYSTKAVERVARALEKGGHTVKVIEGDIHLADE
LREFMPKVVAGETPGMVFNMAYGIQGQNRYTHVPAMMEMLGIPYMGSGPAGHAVVQDKVM
TKIVLQKNNIPTPGFWVFRTPEDTYDDLVFPVIVKPKLESTSMGMEVVDNWDDLRAAVRV
QIEKFQQDILVEQFISGREFAVGLLGNSPNIDVLPIVEINLDDPDQIQTISDKKKKGGVD
KTCPAKLSKEKTEEMKQMCIKAFASLGLNDYARVDFRMDKDENLYILELNSMASLGLGGS
YYYAAQVAGYTYDSLINKILDVSVIRYFGSSIHQHDNETDLTQPLRVVARTYLRGHLHSI
KETLQNFVNLNTHVYNIENVNQLGNMISRRLKHLGFSEHIHRQYDVGNFYYFKNHTEPEN
DVLLISHLDTHYGPDDLISYHEENDKILGSGIAESKGGLAVMLGALHALRFAKKLRKVRC
AVLLTTDDSLGGRFSKKFVKEYSKKSKYIIGLKSGSKDGGIITTCYGRNDYQIRFTTPND
QPTSDIHGIIPVLAKKLTALEKLSKDEKDYRLRTTSVVSKGSHGNTPNFATLTLICSYKT
KKLGELLESKIQTIMKKRETGSKKLDVSINKIQTRPAVLEEPSDTKFYEMVEDLAKKHEI
KIKKHSQLISSDISNVPTKLPALDGFGPLGHNYRSTKEYIIHDSIVDRAALLASVIFRCA
QK
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atgaaagttgccttaatctataatgaaactcagatagatccaaatgatgtaatcaatgtt
tttggaatgactacaaaagagcattacagtacaaaggctgtagaaagagttgcaagagca
ttagaaaaaggtggtcatactgtaaaagtgattgaaggagatatccatctcgctgatgaa
ttacgagaatttatgccaaaagttgttgcaggtgaaacccctggaatggttttcaacatg
gcgtatggcattcaaggtcagaacagatacacacatgttccggcaatgatggagatgctt
ggaattccatacatggggtcaggccctgcaggacatgcagttgttcaagataaggtaatg
acaaaaattgttttacagaaaaacaatattccaactcctggattttgggtgtttagaact
cctgaagatacatacgatgatctagtgtttcctgtgattgttaaaccaaaactagaatcc
acatctatgggaatggaagtagtggataattgggatgatcttcgagctgcagtaagagtt
caaattgaaaaattccaacaggatatcctagtagaacaattcatttcaggacgagaattt
gcagtagggttattgggaaatagtcctaacatagatgttcttccaatagttgaaatcaat
ctagatgatccagatcaaatacaaacgatatctgataaaaagaaaaagggtggtgttgat
aaaacatgtcctgcaaaattatctaaagaaaaaacagaagaaatgaagcagatgtgcatc
aaggcatttgcctctttgggattaaatgattatgctagagttgattttaggatggacaaa
gacgagaatctttacattcttgaattaaattcaatggcaagtctaggacttggtggctcg
tattattatgcagcacaagttgctggatatacatatgattctttaataaataaaatccta
gatgtatctgtaattcgatattttggatcttctatccatcaacatgacaatgagactgat
ttaactcaaccattacgtgtcgttgctagaacctatctgaggggacacttacatagcata
aaagaaaccctgcagaattttgtgaatctaaatacccacgtatacaatattgaaaatgta
aatcaactaggaaatatgatctctaggagattaaaacatcttggatttagtgagcatatt
catagacaatatgatgttggaaatttttattattttaaaaatcatacagagcctgaaaat
gatgttcttctaatctcccatcttgatacgcactatggacctgatgatctaattagctat
catgaagaaaatgacaaaatattgggttcaggtattgcagaaagtaaaggtggattggca
gtaatgctaggtgcattacatgcattacgttttgccaaaaaacttcgaaaagtaagatgt
gctgtattacttaccactgatgatagtttaggtggaagatttagcaaaaaattcgttaaa
gaatattctaaaaaatcaaaatatatcattggattaaaatcaggtagtaaagatggtggg
attataactacttgttatggtaggaatgattatcaaattagatttactactcctaatgat
caacccacctcagacattcatggaataattcctgttttagcaaaaaaacttactgcactt
gaaaagctatcaaaagacgaaaaagattatcgattaagaactacctctgttgtttcaaag
ggttctcatggtaatactccaaattttgccacattgacattgatatgtagttataaaaca
aaaaaactcggagaattacttgaatcaaaaattcaaactataatgaaaaaaagagaaaca
ggttctaaaaaattggatgtatccataaataaaattcaaactagacctgcagtgttagaa
gaaccttctgacacaaaattttatgagatggttgaagatcttgctaaaaaacatgaaatt
aaaatcaaaaaacattctcaacttatctcttcagatattagtaatgttccaactaaactt
ccagcattagatgggtttggacctttaggacataactatcgctcaactaaagaatacata
attcatgacagcattgtagatcgtgctgcattattggcatcagtcatctttagatgtgct
caaaaatga
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