Nitratiruptor sp. SB155-2: NIS_1133
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Entry
NIS_1133 CDS
T00565
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nis
Nitratiruptor sp. SB155-2
Pathway
nis03030
DNA replication
nis03410
Base excision repair
nis03420
Nucleotide excision repair
nis03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nis00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NIS_1133 (ligA)
03410 Base excision repair
NIS_1133 (ligA)
03420 Nucleotide excision repair
NIS_1133 (ligA)
03430 Mismatch repair
NIS_1133 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nis03032
]
NIS_1133 (ligA)
03400 DNA repair and recombination proteins [BR:
nis03400
]
NIS_1133 (ligA)
Enzymes [BR:
nis01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NIS_1133 (ligA)
DNA replication proteins [BR:
nis03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NIS_1133 (ligA)
DNA repair and recombination proteins [BR:
nis03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NIS_1133 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NIS_1133 (ligA)
MMR (mismatch excision repair)
DNA ligase
NIS_1133 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NIS_1133 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_5
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
OAS1_C
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
BAF70242
UniProt:
A6Q433
LinkDB
All DBs
Position
complement(1153469..1155451)
Genome browser
AA seq
660 aa
AA seq
DB search
MIKNYQEYKEAVEKLKRWAYAYYVLDNPEVPDEVYDKLYREVEEYEKAHPDQIDPTSPTQ
RIGAEPAKEFKKIKHLSKMWSMEDVFNQREMHEWLERVYKNAGRKDLQFYIEPKFDGASL
NLIYENGLLKSAATRGDGEVGEDVTANAKTIPSIPLGIDYKGLIEIRGEVVIRKDDFEKL
NHERALKGESTFANPRNAAAGSLRQLDPKVTAQRKLYFYPWDIGYNTLNFKYQHEKMDFV
YQQGFIKPFKRAICENEEEIQQLYEEFSKERDKLPVMLDGMVVKVDEIALHEILGYTVKY
PRWMVAYKFPAVEKMTRIIDIVPQVGRTGVITPVAILEPVEIEGVVVERATLHNYAEIER
KDIRIGDMVIVIRSGDVIPEVTKVLTQYRTGKEKKVERPKVCPVCGQPVLDEGILIKCQN
LSCPARVVNSIIYFASKQCLDISGLGEATVKLLYEKGLVKDVVDLFKLKKEDLLRLPGFA
EKKAQNLIDATQSVKGVECWRFVNALGIEHIGEVASKKLCEKFGLDWYKAPKEKLYEIEG
FGPEMVRSIEEFVEVNKEKIEKLIELLQPTEPKKEEEVENSPLAHKTVVLTGEMKLPRSK
IKELLERAGAHVTNSVSHHTDYVFYGENPGSKFQKAQQLGVPLLPEEKMWELLKEAGIEA
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atgattaaaaattaccaagagtataaagaagcagttgaaaaactcaagcgttgggcctat
gcctactatgtattagacaatccagaggttccagatgaggtgtatgacaaactctatagg
gaagtagaagagtacgaaaaagcccatcctgaccaaatcgatcctacctctccaacgcag
cgaataggggctgagcctgcaaaagagtttaaaaagatcaagcatctgagtaaaatgtgg
tctatggaggatgttttcaaccaaagagaaatgcatgagtggttggaaagagtctataag
aatgctggaagaaaagatcttcagttttacatagaaccaaagtttgacggggctagcctc
aatctcatctatgaaaatggcctactcaaaagtgctgcaacgaggggagatggggaagtt
ggtgaggatgtaacggcaaacgccaaaacgataccctccattcctctaggaatcgactac
aaagggctcatagagatccgaggagaggttgttatacgaaaagacgactttgaaaagctc
aatcatgaacgtgcattaaaaggtgagtctacttttgcaaatcccagaaatgcggctgct
gggagcttaagacagctcgatccaaaagtgacggctcaaagaaaactctacttctatcca
tgggatatcggatacaacacactcaacttcaaataccaacatgaaaagatggatttcgtt
taccaacaaggcttcattaaaccatttaaacgggctatttgtgaaaatgaagaggaaatt
cagcaactttatgaagagttttccaaagagcgagataaacttcctgtgatgctagatggg
atggtggtgaaagtagatgagatagccctgcatgagattttgggctataccgttaaatat
cccagatggatggtggcatataaattcccagcagttgaaaagatgactagaattatcgat
atcgttcctcaagtggggagaaccggcgttattacaccagttgctattttggaacctgta
gagatagaaggtgtagtagtcgagcgggcaacgctgcacaactatgcagagatcgagcga
aaagatattcgcataggggatatggttatcgttataagaagtggagatgtgatccctgaa
gtgacaaaagtattgacacagtatcgaaccggaaaagagaagaaggtcgagcgtcctaaa
gtgtgtccagtgtgtggacagccggtattggatgaaggaattttgatcaaatgccaaaat
ctgagctgccctgctcgcgttgtcaactccatcatctattttgcatccaagcagtgtctg
gatatttcgggacttggtgaagcgacagtgaagctactgtatgaaaaagggcttgtcaaa
gatgtggtggatctatttaagctcaaaaaagaggatctattgagacttcccggatttgcc
gagaaaaaagcgcaaaacctgatcgatgcgacccagagtgtcaaaggggtggagtgttgg
cggtttgtcaatgcccttgggattgagcatattggagaggttgccagcaagaaactgtgt
gagaaatttgggcttgattggtataaagcaccaaaagagaagctgtatgagattgagggt
tttggacctgagatggttcgatcgatcgaagagttcgttgaggtcaataaagaaaaaata
gaaaaactcatagagctgttacagcctacggaaccgaaaaaagaggaagaggttgaaaac
tctccattggcacataaaaccgtagtcttgacaggagagatgaagcttccaagaagtaaa
atcaaagagcttttggagcgtgcgggagcacatgtgaccaatagcgtttcccatcatacc
gactatgttttttacggagaaaatccggggagtaaatttcaaaaagcgcagcagctcggt
gtaccattactgcctgaagagaagatgtgggagcttttaaaagaggctgggattgaggct
tga
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