KEGG   Nitrospira japonica: NSJP_1173Help
Entry
NSJP_1173         CDS       T05001                                 

Gene name
ligD
Definition
(GenBank) Multifunctional non-homologous end joining protein LigD [Includes: 3'-phosphoesterase; DNA ligase D; DNA repair polymerase]
  KO
K01971  
bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
nja  Nitrospira japonica
Pathway
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:nja00001]
 Genetic Information Processing
  Replication and repair
   03450 Non-homologous end-joining
    NSJP_1173 (ligD)
Enzymes [BR:nja01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     NSJP_1173 (ligD)
DNA repair and recombination proteins [BR:nja03400]
 Prokaryotic Type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     NSJP_1173 (ligD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
LinkDB All DBs
Position
I:complement(1101511..1104105)
Genome map
AA seq 864 aa AA seqDB search
MKRGNVARQLQRYRLKRDFVRTPEPSGRRAQERSVEDRLFVIQKHAATRLHYDFRLELDG
TLKSWAVPKGPSLDPSQKRLAVHVEDHPLDYAEFEGTIPSKQYGAGTVLIWDRGTWQPIG
DPHDGYRRGVLKFRLDGRKLHGAWALVRMHPRGKSDRKGDENDNWLLIKEKDESAERGSR
AEIVERSTESVKSGRQLEEVAESHVPSLKAGDLTGARQAPLPERLSPQLATLVDAMPSGE
GWIHEIKYDGYRILCRIRRGKAQLFTRNGNDWTEKLSVQVQAVESLGLTDAWLDGEVVVF
TEEGKTDFQALQNAFDANFTGRIAYCLFDIPYVDGYDLRAAPLIERKRLLAALLDPLRPG
RGRGSRSRQRHAGQTVLRYSDHITGQGETSFEEACRRGLEGLIAKRADSVYRSGRGRSWL
KVKCERRQEFVIGGFTEPAGSRSGFGALLVGYYEQGRLRYAGRVGTGFSMTSLRTLRRRL
TSLEQSRPPFADPPTGREAHGIRWVSPELVAEVRFSEWTKDGLLRQPSFQGLRTDKAPRS
IGRERSASEDTATSPASPEPNAARAAVRGTTETIRLTHPDRVLYPDVGLTKKDLARYYEL
VADRILPHLRGRPLTLVRCPRDYQDCFYQKHVNERMPPGIGRVPIEEDGGRAMYMTADSL
EALQGLVQMNALELHTWGATRDRLDRPDRLTFDLDPDPSLPWPRVVEAAQLMRELLTELG
LACFLKTTGGHGLHVVTPIQRNMDWEDAKGFAKSVADHMAATIPQRFISVMAKRARKGKI
FIDYLRNGRGATAIAAYSPRARSGAPVSMPIAWEELHSARLKSDHFTVLNIEERLKDRTR
DPWEDYAQSARTVTNAMKARLSRR
NT seq 2595 nt NT seq  +upstreamnt  +downstreamnt
atgaaacgcggcaatgtcgcccggcagcttcaacgctaccgcctcaagcgcgacttcgta
cggactccggagccgagcggacgacgggctcaggaacgctccgttgaagaccgcctcttc
gtcattcaaaaacacgcggcgacacgtttgcactatgactttcgcctggaactcgacgga
acgctcaaaagctgggcggtccccaaagggccgagtctcgatccctcgcagaagcgattg
gccgtccatgtcgaggaccatccgctcgactatgccgagttcgaagggaccattccgtcg
aaacagtacggagccggcacggtcctcatctgggatcgtgggacctggcaacccatcgga
gacccacacgacgggtaccgccgaggagttctgaagtttcggctggacgggaggaaattg
catggcgcatgggcgttggtgcgcatgcatcctcgagggaaatccgatcggaaaggggat
gagaatgataactggctgctcatcaaggaaaaagacgagagtgccgaacggggcagccgg
gcggagatcgtcgaacgatcgaccgaaagcgtcaagagcggccggcaactggaggaagtc
gccgaatctcacgtcccatctttgaaagcaggcgaccttaccggcgctcgacaggcgcct
ctaccggaacgactgtcgccccagttggccacactcgtcgacgcgatgccgtccggcgaa
ggttggattcatgaaatcaagtacgacggctatcgcatcctctgccggatccggcgcgga
aaggcgcagctgttcacgcgcaacggcaacgactggaccgagaagctttcagttcaggta
caggctgtcgaatcgctggggttgaccgatgcctggctcgacggagaggtggtcgtcttt
accgaagagggcaagacagatttccaggccctgcaaaatgccttcgacgccaatttcacc
ggccggatcgcatactgcttgttcgatatcccgtacgtggacggctatgacttgcgggcg
gcgccgctcatcgagcgcaaacgcctgctggcggcgctcctcgatccattgcggccggga
cggggacgcggctcccgctcacgccagcggcacgccggccagacagtcttgcgctacagc
gatcacattaccggacagggcgaaacctctttcgaagaggcttgccgccgcggcctcgaa
gggctgatcgccaagcgagcggattccgtctaccggtccggacgaggccggtcctggctc
aaggtcaaatgcgaacgacgccaggaattcgtcatcggcggatttacggagccggccggg
tcccggtccgggttcggcgcattgctggtcggctactacgagcagggacggctccgctat
gcgggaagggtcggaaccggattctccatgacgtccctgcgtacgctgcgacgcagattg
acatctctcgaacagtcgcggccgcctttcgccgatccgccgaccggtcgcgaggcgcac
gggatccgctgggtaagcccggaactggtcgcggaagtccgcttctcggaatggaccaag
gacggcctgctccggcaacccagttttcaagggcttcgaacggacaaggcgcctcgttca
atcgggcgggaacgttccgcttcggaagacacggcgacgtcaccagcctcacccgagccg
aacgccgcgcgagcagcagtccgcggcacgaccgaaaccatccggctgacccatcccgat
cgcgtgttgtatcccgacgtcggcctgaccaagaaggacctggctcgctattacgagttg
gtagcggatcggatccttccacacttgcgcggacgtccgttgacccttgttcgttgtccg
cgcgattaccaggattgcttctatcagaaacacgtcaacgaacgcatgccgccgggcatc
ggtcgtgttccgatcgaggaagacggcggccgtgccatgtatatgacggcggactcgctc
gaggcattgcagggcctcgtgcagatgaacgcgctggaactgcacacgtggggcgcaacg
cgagaccggttggaccggcccgaccgtttgacctttgacctggatcccgatccttcattg
ccatggccgcgggtcgtcgaagcggcgcaactgatgagggaattgctcaccgaactcggg
ctcgcgtgttttctgaagacgacgggcggacacggcttgcacgtcgtcacgccaatccag
cgcaacatggattgggaggacgcgaaaggtttcgcaaaatcggtcgccgatcacatggcg
gccacgattccgcaacgattcatatccgtcatggcgaagcgggcgcggaaaggaaagatc
ttcatcgattacttgcgcaacgggcggggcgcgacggcgatcgccgcctattcgcccaga
gccaggtccggcgcaccggtgtcgatgccgatcgcctgggaagaattacactcggcgagg
ctgaaatcggatcacttcaccgtattgaatatagaggagcggctcaaggatcggacgcgc
gatccgtgggaggactatgcgcaatccgcgcggacggtgacgaacgcgatgaaagccaga
ctgtcgcgacggtga

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