Niastella koreensis: Niako_1577
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Entry
Niako_1577 CDS
T01679
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
nko
Niastella koreensis
Pathway
nko03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nko00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Niako_1577
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nko03400
]
Niako_1577
Enzymes [BR:
nko01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Niako_1577
DNA repair and recombination proteins [BR:
nko03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Niako_1577
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AEV97946
UniProt:
G8T6U3
LinkDB
All DBs
Position
complement(1949439..1952243)
Genome browser
AA seq
934 aa
AA seq
DB search
MSLATYKKKRSFNQTPEPEGKKPAGKKTAVSSQLHFVVQKHDATRLHYDFRLEMEGVLKS
WAVPKGPSMNPADKRLAMMVEDHPYDYKDFEGIIPEGNYGAGTVIVWDEGTYEPIEPFDD
PKKAEKHLLEQLRKGSLKIVLHGQKLKGEFALVQIKSSEDNAWLLIKHNDKYATQTDVTK
KAKSVQSGMKLEQVAKESTHEWVSNKKSTTKKKSSAAKKSPAQSAVASKKQPAKKKVPQA
IDGLLRKGKKQAMPSGIIPMLATLTDNSFDDKNWIFEIKYDGYRALSYINDSEVTIMSRK
DLSFNKKFPPVAEALKQLELEAILDGEIVALNEEGRSDFQLLQQWQKNGEGELVYYVFDL
LWLNGYNLMHLPLVERKEILQQILPEHPMIRYSDHIEQKGRQFFEVANKQGLEGIMAKER
DSAYTPKIRTRQWLKIKTVQRQEVVIAGFTETRGSRSHFGALVLGVYEKDKLIYVGHTGS
GFTEKSLAAVYKKLQPLIIDKSPFATKPKTNMPCTWIKPVLVGEVKFSEWTKDNILRQPI
FVGLREDKNAKDVHKENAVHNSTAVEEGEAETRSTKKQSSQKMPTKKAAKSSKPKAKSKI
QNRKMEANDKRVARSVNITSEKTLLNDSDKEQVVTIDKKELTFTNLDKIYWPADKYTKRD
LINYYDQMAAFILPYLKDRPQSMNRHPNGIDKPGFYQKDVSGGKVADWLEKHDYLSESDG
ETKQYLVCTDEASLLYMANLGCIEMNPWHSTTKKPENPSWCVIDLDPGNISFDKVIEAAQ
VIKQLTDELGIDTYCKTSGSTGLHIYIPLAAAYDYDQSRQLAELIVTMAYNEMPSFTSLE
RSPAKRKNKIYLDYLQNRTIQTIAAPYSLRPKPGATASAPLHWEEVKKGLAIQDFTIENM
YSRAKEVGDIFKPVLGKGINLKKVLTKINSMQSK
NT seq
2805 nt
NT seq
+upstream
nt +downstream
nt
atgagtcttgctacttataaaaagaaacggtcgtttaaccagacaccggaaccggagggt
aaaaaaccagccggtaaaaagacagcagtttccagccaactgcattttgttgttcagaaa
cacgacgccacccggttgcattatgacttccggttggagatggaaggcgtactgaagtca
tgggccgttcctaaagggccttcgatgaacccggccgacaaacggctggccatgatggtg
gaagaccatccctacgattataaagactttgaaggcatcattcccgaaggcaattatggc
gctggtaccgtcatcgtttgggatgaaggcacctacgagcctatagagccttttgacgat
ccgaaaaaagcagaaaaacatttactggaacaattgcgcaagggctcgctgaagatcgtt
ttacacggacagaaattaaaaggcgaattcgccctggtgcaaataaaaagcagcgaagac
aatgcctggctgcttataaagcataacgacaaatacgccacccaaacagatgttaccaag
aaagcgaagtcggtgcagtcgggaatgaagttagaacaggtggccaaagaaagcacccat
gaatgggtaagcaataagaaatctaccacaaagaaaaaaagcagcgccgctaaaaaatca
cctgcccaatcagcggtggcgtcaaaaaaacaacccgctaaaaaaaaagtcccacaggca
atagacgggttactcagaaaaggtaaaaagcaggccatgccatcgggtatcattcccatg
ctggccacccttaccgataattcgtttgatgacaaaaactggatcttcgagataaaatac
gatgggtatcgtgccctttcctacatcaatgacagcgaggttaccattatgtcgagaaag
gacctttcgttcaataaaaagtttccgcctgttgcagaagcgttgaaacaactggaactg
gaagccatactggatggtgagatcgttgccctgaacgaggaaggcagaagtgattttcaa
ttgcttcagcaatggcaaaagaatggcgaaggagaactggtatattacgtgttcgacctg
ttatggttgaatggatataacctgatgcatcttccattggttgaacgcaaggagatcctg
cagcaaatactaccggaacatccgatgatccggtacagcgatcatattgagcaaaaaggc
aggcagttttttgaagtggctaataaacagggcctggaaggtattatggccaaagaacgt
gacagtgcctatacacccaagatccgcacacggcaatggttaaagatcaaaacggtgcaa
cggcaggaagtagtgattgcaggctttacagaaacccggggaagccgcagccattttggc
gcccttgtattgggcgtatatgaaaaagataaactgatctatgtaggccataccggttcg
ggctttaccgaaaaatcgctggctgcggtttataaaaaacttcaaccactgataattgac
aaatcgccttttgctaccaaacccaaaaccaatatgccctgcacctggataaaaccggtg
ctggtgggtgaggtaaaattttctgaatggacgaaagacaatattctgcgccaacccatc
tttgtgggtttgcgggaagacaagaacgccaaagacgttcataaagaaaatgcagtacac
aattctacagccgtagaagaaggcgaagctgaaaccagatccaccaaaaaacaaagttcc
caaaagatgccaacgaagaaagcagctaaaagcagtaagcctaaagctaaaagcaaaata
caaaacagaaaaatggaagctaatgacaaacgtgtggccaggtctgtaaatattacatcc
gaaaaaactttgttgaacgattctgataaagaacaggttgttaccatcgataaaaaagaa
ctgacgtttaccaatctggataaaatatactggccggctgataaatacaccaaacgcgac
ctgattaattattacgaccaaatggcggcttttatccttccttatttgaaggataggccg
caatcgatgaaccggcatcccaatggtattgacaagcccggcttttatcaaaaagatgta
agcggcggcaaagtggccgactggctggagaaacacgattacctgagtgaatcggatggt
gaaacaaaacaatacctggtttgcaccgatgaagcgtccctgctttatatggccaacctg
ggttgtattgaaatgaacccctggcacagcaccacaaaaaaaccagagaacccaagctgg
tgtgttattgacctggaccccggcaatatttcattcgacaaagttatagaagccgcccag
gtaattaaacaacttacagacgagttaggcatagatacgtattgcaaaacatccggctca
acgggtttgcatatttatattccgctggctgcagcgtatgactacgaccagtcgaggcag
ttagcagaattaatagttacgatggcgtataatgaaatgccgtcctttaccagcctggaa
cgcagcccggccaaaaggaaaaacaagatctatctcgattatttacaaaaccgaaccata
caaaccatagcagccccttactccttacgccccaaaccgggcgccacagcctcggcgcct
ttgcattgggaagaagttaaaaaaggattggccattcaggattttactatcgaaaatatg
tatagccgggctaaagaggtgggcgatatctttaaacccgtattggggaaaggcattaat
ctgaaaaaagtactcactaagatcaacagcatgcagagcaaatag
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