Niastella koreensis: Niako_4922
Help
Entry
Niako_4922 CDS
T01679
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
nko
Niastella koreensis
Pathway
nko03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nko00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Niako_4922
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nko03400
]
Niako_4922
Enzymes [BR:
nko01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Niako_4922
DNA repair and recombination proteins [BR:
nko03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Niako_4922
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AEW01162
UniProt:
G8T7C6
LinkDB
All DBs
Position
6072757..6074811
Genome browser
AA seq
684 aa
AA seq
DB search
MAVTSQRKKKTVGVRRRKSAAPTGKAGVKAPFPTGFAPMLATLVDKPFDADNWLFEVKWD
GYRAVAHCDGKQVSVISRNNKSFNEKFYPITAALEELNLHAVLDGEIIISNKEGVSSFGD
LQNWRSEADGELLYYVFDLLWLNGYLLIDLPLQQRRDILKKMLPQHPTIQLSQSFEAPGT
QFYEMAKEMNMEGIIAKKADSVYVPGVRSKDWLKIKIAKRQEVVIGGYTHNEGSSKLFSS
LLVGVFENGVLHYTGKIGTGFTDKDQRDMMEQFKPLVRKSCPFGTEPDYNKPSRFRPNPP
KATAIWLKPQLVCEVAFAEITSDGVMRHPSFEGMRIDKKATDVKAEKARPLKIVAPESIL
HKEKILTRRSAAERKTLLNPGEKQQERSINGYKLKFSNLNKIYWPKEKITKRDLLNYYYQ
VSPVILPYLKDRPQSMNRFPNGIDGESFYQKNVTGKIPDWINTFPYTDKSVKKSFLVPVR
EADVLYMASLGCIEMNPWSSRVQKPDNPDWCIIDLDPDTNTFEQVIKTAQVTHELLDSAG
IPNYCKTSGSTGIHIYMPLGAKYVYEASREFGRLIATMVHEQLPRFTSIERQTADRKGKI
YIDFLQNRPQATLACAYSLRPKPGATVSMPLHWEEVKKGLKMKDFTIHNAVARIKEQGDI
FKPVLGKGINMKKAIESLQKLLHS
NT seq
2055 nt
NT seq
+upstream
nt +downstream
nt
atggcagttacttcacaaaggaagaaaaagactgttggggtacgccggcgcaaaagcgcg
gcgcccaccggtaaagcaggggtaaaagcccccttccccaccggcttcgcccccatgctg
gccacgctggttgataaaccttttgatgccgataactggttgtttgaggtaaaatgggat
ggctaccgggctgtggcgcattgtgatggcaaacaggtgtcggttatttcgcgcaacaat
aaatcattcaacgaaaaattctatcccattactgctgccctggaggaattaaatcttcat
gccgtgctggatggggagatcattatttccaataaagaaggcgtctccagttttggcgac
ttgcagaactggcgcagcgaagctgatggtgaattgttgtattatgtatttgacctgtta
tggctgaatgggtatttgctcattgacctgccattacaacaacgcagggacatcctgaaa
aaaatgctgccgcagcatccaaccatacagctaagtcaatcctttgaggcccccggtact
caattttacgaaatggccaaagagatgaacatggaaggcatcattgccaaaaaagccgac
agtgtgtacgtgccgggtgttcgctcaaaagactggctgaagataaagatcgcaaagcgg
caggaagtagtgatcggtggttatacccacaacgaaggttcttccaaattattcagctcg
ctgctggtgggtgtttttgaaaatggggtgttgcattacaccggcaaaataggcaccggt
tttaccgataaagaccagcgcgatatgatggaacagtttaaaccactggtgcgtaaaagc
tgtccgtttggaacagaacccgattataacaagccatcccggttccgccctaatccgcca
aaagcgacagcaatctggttaaaaccccaactggtttgcgaagtagcatttgccgagatc
accagcgatggcgttatgcggcatccttcatttgagggcatgcgcattgataaaaaagca
accgacgtaaaagctgaaaaagccaggccgctgaagatagtagcgcccgaatccattctg
cataaagaaaaaatactcacccgccgctcagccgccgaacgtaaaaccttattaaacccc
ggcgaaaaacaacaggaaaggtccatcaacggatataaactaaaattcagcaacctcaac
aaaatctactggcccaaagaaaagatcaccaagcgcgatttgctgaattattattaccag
gtgtcgccggttattttaccttatttgaaagaccggccccaatcgatgaaccggtttccc
aatggcattgatggcgaaagcttttaccagaaaaatgtaacaggtaaaattccagactgg
atcaacacttttccgtataccgataaaagcgtcaaaaaaagcttcctggtaccggtgcgg
gaagcagatgtattatatatggcttcgctgggctgcattgaaatgaacccctggagcagc
cgggtgcaaaaacccgacaatcccgactggtgtatcattgacctcgaccccgataccaat
acgttcgagcaggtaataaaaaccgcccaggttacacatgagctcctggatagcgcgggt
attcccaattactgtaaaacatccggttcaaccggcattcatatttatatgccgctgggc
gctaaatatgtgtatgaagcttcccgggagtttggccgcctcattgctaccatggtgcac
gaacagctaccccggttcaccagtattgaacggcaaacggccgatagaaaaggaaagatc
tacatcgactttttacagaaccgcccacaagccaccctggcctgcgcctactcccttcgc
cccaaacccggggctacggtttccatgcctttgcattgggaagaagttaagaaagggctt
aaaatgaaagacttcaccattcacaatgcagtggcccgcattaaagaacagggcgatatt
tttaagccggtgctgggtaaaggcattaatatgaaaaaagcaatcgaatcccttcaaaag
cttttacattcctag
DBGET
integrated database retrieval system