Niastella koreensis: Niako_6238
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Entry
Niako_6238 CDS
T01679
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN/SigL
KO
K03092
RNA polymerase sigma-54 factor
Organism
nko
Niastella koreensis
Pathway
nko02020
Two-component system
nko02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
nko00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Niako_6238
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Niako_6238
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nko03021
]
Niako_6238
Transcription machinery [BR:
nko03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Niako_6238
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
HTH_IclR
LacI
HTH_12
MarR
SF3b1
MarR_2
Motif
Other DBs
NCBI-ProteinID:
AEW02463
UniProt:
G8TB80
LinkDB
All DBs
Position
complement(7724719..7726200)
Genome browser
AA seq
493 aa
AA seq
DB search
MSQSLQQKLLQKLSPQQIQLMKLLQVPTANLEERIKEELEENPALEVSEEAHDEYDTETK
DEFDSSDEEDFDVDGSEDEYGNIDISEYVGDEDGEIADYKLRDDNYPEMDDKKVVPYKIE
TSFHEHLLGQLGMMKMTDNERRIAEQIVGSIDDDGYLRRETAAIVDDLAFRQNIETNEQE
VEKVIKMVQQFDPAGVCARDLQECLLLQLHRQQRGGKNVDRAIDVLTDYFDEFTKKHYDK
IQRGLNLDDEGLKDVITQIIRLTPKPGGNHYDINKAESYVVPDFFVYNNGGKLELTLNSK
NAPDLRISEGYRDMLREYDKGSKKDKRQKEAVLFIKQKIDAAKWFIDAIKQRQHTLSSVM
ETIMTYQREFFLTGDETTMKPMILKDIAERTGLDISTVSRVANSKFVQTEFGTYRLKFFF
SESLSTDSGEEVSTREVKKILSDLIEGESKKKPLSDEKLTELLQEKGYNIARRTVAKYRE
QLNIPVARLRKEL
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
ttgagtcaaagtttacagcaaaagctattacaaaaactttctccacagcaaattcagctc
atgaaattgctgcaggtgcctacggctaatctggaagaacggataaaggaagaactggaa
gaaaatcccgctttggaagtgtctgaagaagcgcatgacgaatatgataccgagacgaaa
gatgaattcgacagcagcgacgaggaggattttgatgtagatggaagtgaggatgaatac
ggcaatatcgacattagcgaatacgtaggcgacgaagatggtgaaatagctgattacaaa
ttgcgggatgataactatcccgaaatggatgacaaaaaagttgttccatataaaattgaa
acgtcttttcatgagcacctgctggggcagttaggcatgatgaagatgaccgacaatgag
cgaaggattgcagaacagatagtaggcagtattgacgacgatggttacctgcgccgcgaa
acagccgctatcgttgatgacctcgcgttccgccagaatattgaaaccaacgaacaggaa
gtagagaaggtgatcaaaatggttcaacagtttgatccggcgggagtatgcgcccgtgat
ctgcaggaatgtttgttattgcaattacatcgccagcaacgcggaggcaagaacgtagac
agggccatcgatgttcttaccgattacttcgatgaatttaccaaaaagcactacgataaa
attcagcgtggcctgaacctcgatgatgaagggttgaaagatgtgatcacccagatcatc
aggcttacccccaaaccgggcggtaaccattacgacatcaacaaagctgaaagctatgta
gtgcccgacttctttgtatataacaacggcggcaaactggagcttaccttaaactccaag
aacgcccccgatctgcgcatcagcgaaggctatcgcgatatgttgcgggaatacgataaa
ggcagcaagaaagataagcggcagaaagaagcggtgttattcattaaacaaaagatcgac
gcggccaagtggttcatagatgctattaaacaacgccagcatacgctgagcagtgtaatg
gaaaccatcatgacctatcagcgggagtttttccttaccggggacgaaaccaccatgaag
cccatgatcctgaaagatattgccgaacgtaccgggctcgatatttccaccgtgagccgg
gtggccaacagcaaatttgtacaaacagagttcggaacttatcggttgaaattcttcttt
agtgaatcgctcagtaccgacagcggggaagaagtatctacccgcgaggtaaaaaagatc
ctcagtgacctgattgagggcgaaagcaaaaagaaaccgttgagcgacgaaaaactcact
gagctattgcaggaaaaaggttataatattgcacgccgaaccgttgccaagtaccgcgaa
caattaaatattccggtggcccggttacgcaaagaactgtaa
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