Nomascus leucogenys (northern white-cheeked gibbon): 100582859
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Entry
100582859 CDS
T03265
Symbol
COL11A2
Name
(RefSeq) collagen alpha-2(XI) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
nle
Nomascus leucogenys (northern white-cheeked gibbon)
Pathway
nle04820
Cytoskeleton in muscle cells
nle04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
nle00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
100582859 (COL11A2)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100582859 (COL11A2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
nle00536
]
100582859 (COL11A2)
Glycosaminoglycan binding proteins [BR:
nle00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100582859 (COL11A2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
100582859
NCBI-ProteinID:
XP_030658747
LinkDB
All DBs
Position
22a:complement(54190838..54220497)
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AA seq
1736 aa
AA seq
DB search
MERCSHCHHLLLLLPLVLGLSAAPGWAGAPPVDVLRALRFPSLPDGVRRAKGICPADVAY
RVARPAQLSAPTRQLFPGGFPKDFSLLTVVRTRPGLQAPLLTLYSAQGVRQLGLELGRPV
RFLYEDQTGRPQPPSQPVFRGLSLADGKWHRVAVAVKGQSVTLIVDCKKRVTRPLPRSAR
PVLDTHGVIIFGARILDEEVFEGDVQELAIVPGVQAAYELCEKRELECERGQRERPQNQQ
PHRAQRSPEQQPSRLHRPQNQEPQSQPTESLYYDYEPPYYDVMTTGTTPDYQDPTPGEEE
EILESSLLPPLEEEQTDLQVPPTADRFQAEEYGEGGTDPPEGPYDYTYGYGDDYREETEL
GPALSAETAHSGAAAHGPRGLKGEKGEPAVLEPGMLVEGPPGPEGPAGLIGPPGIQGNPG
PVGDPGERGPPGRAGLPGSDGAPGPPGTSLMLPFRFGSGGGDKGPVVAAQEAQAQAILQQ
ARLALRGPPGPMGYTGRPGPLGQPGSPGLKGESGDLGPQGPRGPQGLTGPPGKAGRRGRA
GADGARGMPGEPGVKGDRGFDGLPGLPGEKGHRGDTGAQGLPGPPGEDGERGDDGEIGPR
GLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQGPKGSLGPQGEPGPPGQQGTPGTQGLP
GPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHPGKEGPPGTKGNQGPSGPQGPLGYPGPR
GVKGVDGIRGLKGHKGEKGEDGFPGFKGDIGVKGDRGEVGVPGSRGEDGPEGPKGRTGPT
GDPGPPGLMGEKGKLGVPGLPGYPGRQGPKGSLGFPGFPGASGEKGARGLSGKSGPRGER
GPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNGFPGPKGPPGPPGKD
GLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGAAGETGPMGERGHPGPPGPPGEQGLPGTA
GKEGTKGDPGPPGAPGKDGPAGLRGFPGERGLPGTAGGPGLKGNEGPSGPPGPAGSPGER
GAAGSGGPIGPPGRPGPQGPPGAAGEKGVPGEKGPIGPTGRDGVQGPVGLPGPAGPPGVA
GEDGDKGEVGDPGQKGTKGNKGEHGPPGPPGPIGPVGQPGAAGADGEPGARGPQGHFGAK
GDEGTRGFNGPPGPIGLQGLPGPSGEKGETGDVGPMGPPGPPGPRGPAGPNGADGPQGPP
GGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPKGPTGDD
GPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRGEDGEAGQPGSPGPTGENGPPGPLGKR
GPAGSPGPEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPDGLRGLPGSVGQQGRP
GATGQAGPPGPVGPPGLPGLRGDAGAKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGSP
GQKGETGIPGASGPIGPGGPPGLPGPTGPKGAKGATGPAGPKGEKGVQGPPGHPGPPGEV
IQPLPIQMPKKTRRSVDGSRLMQEDEAIPTGGAPGSPGGLEEIFGSLDSLREEIEQMRRP
TGTQDSPARTCQDLKLCHPELPDGEYWVDPNQGCARDAFRVFCNFTAGGETCVTPRDDVT
QFSYVDSEGSPVGVVQLTFLRLLSVSAHQDVSYPCSGAAWDGPLRLRGANEDELSPETSP
YVKEFRDGCQTQQGRTVLEVRTPVLEQLPVLDASFSDLGAPPRRGGVLLGPVCFMG
NT seq
5211 nt
NT seq
+upstream
nt +downstream
nt
atggagcggtgcagccactgccatcacctcctcctcctcctacctctggtgctggggctg
agcgcggccccaggctgggcaggtgcaccccctgtggatgtgctccgggccctgaggttc
ccctccctccctgatggtgtccggagagcgaaaggcatctgtccagctgatgtggcctac
cgagtggcacgacctgcccagctcagtgcacccactcgccagcttttcccaggaggattt
cccaaagatttctctctgctgactgttgtccggacccgccctggtctccaagctcccctc
ctgactctctacagtgcccagggtgtccgacagctgggcctggagctgggccgacctgtc
cgcttcctatatgaagaccagactgggcggcctcaacctccctctcagccagtcttccga
ggcctcagcctagcagatggcaagtggcaccgtgtggctgtggctgtgaagggccaatct
gtcaccctcattgttgactgcaagaagcgagtcacccggcctctcccccgaagtgctcgt
ccagtattggacacccatggagtgatcatctttggtgcccgtattctggatgaagaagtc
tttgagggtgatgtccaggagctggccattgtcccaggggtccaggcagcctatgaattg
tgtgaaaagagggagctggaatgtgagaggggccagagggaaagaccccaaaaccaacag
cctcacagagcccagagatctccagagcagcaaccgtcaagacttcataggccacaaaat
caggaaccccagagccagcccactgagtctctctactatgactacgagcccccctattat
gatgtgatgactacggggacaacccctgattatcaggaccccaccccaggtgaagaggaa
gaaatcctggagtcgagcctcttgccacccctcgaggaggagcagacagatctccaggtc
ccccccacagctgacaggttccaggcagaggaatatggggagggtggcacagacccccct
gaagggccctacgattacacctatggctatggggatgattatcgtgaggagacagagctt
ggccctgccctctctgcggagacagcccactcaggagccgctgcccatggaccccgaggg
ctgaagggagagaaaggagagcctgcggtgttggaacctggtatgctcgtggaggggccc
cctggcccagaaggccctgcaggattgattggtccccctggcatccaggggaacccaggc
ccagttggagaccctggagagaggggaccccctggccgagcaggtctccctggatcagat
ggggctcctggtcctcctggcacatctctcatgctcccattccggtttggcagtggtggg
ggtgacaagggccctgtggtggcggcccaggaggctcaggcccaggcgatcctgcagcag
gcgaggctggcacttcgtggaccccctggccccatgggatacacaggacgccctggaccc
ttgggccaacctgggagccctggcctgaaaggagagtctggagacttaggacctcagggt
cccagaggacctcagggcctcacaggccctcctggcaaggctgggcgaaggggccgggca
ggtgctgatggagcccgagggatgcctggagaacctggagtgaagggtgaccgaggtttt
gatggactcccagggctccctggagagaagggccataggggtgatactggtgcccagggc
cttcctggtccccctggtgaggatggagagaggggagatgatggggagattgggcctcga
gggctgcctggagagtcgggacctcgaggtctccttggccccaaaggcccacctggtatt
cctggaccccctggcgtccgaggcatggatggtccccagggccccaaagggagcttggga
ccccagggagagccagggcctcctggacaacagggcacccctgggacccagggtctcccc
gggccccagggtgccatcggccctcatggagagaagggtcctcaagggaagccagggctc
cccggcatgcctggctcagacggacccccgggtcacccggggaaggaaggtccccctgga
accaaaggaaaccagggtccttctggacctcagggtcctctaggatacccaggacctcga
ggggtcaagggtgtggacggaattcggggtctgaagggtcataagggtgagaagggcgag
gatggctttcctgggttcaaaggtgacataggcgtgaaaggtgacaggggcgaggttgga
gtccctggttccaggggagaggatgggcctgaggggccaaagggacgcactggaccaact
ggagaccctgggcccccagggctcatgggcgagaagggcaagctgggtgttcctggtctg
cctggctatcctggacgtcagggacccaaggggtccctaggatttcctggctttcctggc
gccagtggagagaagggagcccggggcctatcggggaagtcagggcctcggggagaacgg
ggccccacgggtccacggggtcagcggggaccccgaggtgccactgggaagtctggagct
aagggaacatctggtggtgatggcccccatgggccccccggagagaggggcctccctgga
cctcagggtcccaacgggtttcctggacccaaaggacccccgggcccccctgggaaggac
gggctgccgggacacccaggccagagaggagaagtgggtttccaagggaagaccggcccc
cctggtcctccaggagtggtgggacctcagggagcagcaggagaaaccggccctatgggg
gagagaggtcacccaggccccccggggccccctggagagcagggactacctgggacggct
ggaaaagaaggaacaaagggtgaccctggtccccctggggccccagggaaggatggacct
gctggtctgaggggattcccaggagagagaggcctcccaggcactgctggtggacctggt
ttgaaggggaatgaaggtccgtctggcccccctggccccgcaggctcccctggggaacga
ggtgcagcaggatcaggaggacccattggtccaccagggcgcccaggcccgcagggtccc
cctggagcagcaggagagaaaggcgtcccgggtgagaagggccccattggcccgactgga
cgagatggggtgcagggtcctgtggggcttcctggtcctgctgggcctccaggtgtggct
ggagaggatggagacaagggtgaggtaggggaccccggacagaagggcaccaaagggaac
aagggcgaacatggccctcctggaccccctggacccattggtcctgtggggcagcctgga
gcagcgggagcagatggggagcccggagctcggggaccccagggacattttggagccaaa
ggtgatgaaggaacaagaggattcaatgggcctccaggacccattggcctacagggtttg
ccaggcccctctggggagaagggagaaacaggagatgtgggtcctatgggaccacctggc
cccccaggacctcgaggtccagctggacccaatggcgctgatggcccacaaggtcccccg
ggaggtgttgggaacctgggtccccctggagagaagggggaaccaggagagtcaggatct
ccagggatccagggcgagccaggtgtcaagggtccacgtggggaacgtggagagaaagga
gagtcagggcagccaggagagccaggaccaccagggcctaaaggccccacaggcgatgat
ggccccaaagggaaccctggtcctgttggttttcctggtgaccctggcccccctggagaa
ggtggccctcggggccaggatggtgctaagggtgaccgaggcgaggatggtgaggcagga
cagcctggatcccctggtcccactggggagaatggacctccagggccacttggaaagcgg
ggtcctgccggctcgcctggtcccgaggggcgacaaggagggaagggagccaagggagat
cccggtgctataggggccccggggaagacaggcccggtgggtcctgcaggcccagcaggg
aaacctggccctgatggtctgagggggctcccaggctcagtgggtcagcaaggccgacct
ggagctacaggccaggctgggcccccaggtcctgtgggacccccagggctgcctggtctc
cggggcgatgctggagccaagggagagaagggccacccaggtctcattggactgattggg
cccccgggtgagcagggagagaagggagatcggggacttcctgggcctcagggctcccct
gggcagaagggcgaaacgggtatcccaggagcatccggccccattggtcctggaggaccc
cccggcctccccggacctactggccccaaaggagccaaaggagccacaggcccagccgga
cccaagggagagaaaggtgtgcagggccctccaggacacccgggtcccccgggcgaggtg
atccagccactgcccattcagatgcccaagaagactcggcgctcggtggatggaagccgc
ctgatgcaggaagatgaggccataccgaccgggggagcccccggcagtcctggggggctg
gaggagatctttggctcactcgactccctgcgggaggagattgagcagatgaggcggccg
acggggacccaggacagccctgctcgcacctgccaggacctgaagctgtgccacccagag
cttcccgatggagagtactgggtcgaccccaaccagggctgtgctcgggatgccttccga
gttttctgcaacttcacagcagggggtgagacttgtgtgacgcctagggatgatgtcact
cagttctcttacgtggactcagagggctccccggtgggtgtggtccagctcaccttcctg
cggctgctcagcgtctcagcccaccaggacgtctcctacccctgctctggagcagcctgg
gatggtcccctgagactccgcggggccaatgaggatgagctgagcccggagaccagcccc
tatgtcaaagaattcagagatggctgccagacacagcaaggccggacggtgctggaggtg
cgaacgcctgtgctggagcagctgccagtgctggatgcctccttctcagacctgggagcc
ccaccgaggcggggaggggtgctgctggggcctgtttgcttcatgggatag
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