Nomascus leucogenys (northern white-cheeked gibbon): 100586102
Help
Entry
100586102 CDS
T03265
Symbol
COL5A3
Name
(RefSeq) collagen alpha-3(V) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
nle
Nomascus leucogenys (northern white-cheeked gibbon)
Pathway
nle04820
Cytoskeleton in muscle cells
nle04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
nle00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
100586102 (COL5A3)
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
100586102 (COL5A3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
nle00536
]
100586102 (COL5A3)
Glycosaminoglycan binding proteins [BR:
nle00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
100586102 (COL5A3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
100586102
NCBI-ProteinID:
XP_030676769
Ensembl:
ENSNLEG00000012017
LinkDB
All DBs
Position
10:61086884..61136681
Genome browser
AA seq
1746 aa
AA seq
DB search
MGNGRGLGWPRAGLCLLLAALQLLPGTQADPVDVLKALGVRGGQAGVPEGPGFCPQRTPE
GDRAFRVGQASTLGIPTWELFPDGHFPENFSLLITLRGQPANQSVLLSIYDERGARQLGL
ALGPALGLLGDPFRPLPQQVNLTDGRWHRVAVSIDGEMVTLVADCEAQPPVLGHGPRFIS
IAGLTVLGTQDLGEKTFEGDIQELLISPDPQAAFQACERYLLDCDNLVPAATGAPQDELE
TPRPRRKGKGKGRKKGRRRKGKGRKKKNKEILTSSPPPDSPENQTSTDIPKTETPAPNLP
PTPTPLVVTSTVTTGLNATILEGSLDPDSGTELGTPETKAAKEVEEGDDSTMGPDFRAAE
YPSRTQFQIFPGAGEKGAKGEPAVIEKGQQFEGPPGAPGPRGVVGPSGPPGPPGFPGDPG
PPGPAGLPGIPGIDGIRGPPGTVIMMPFQFAGGSFKGPPVSFQQAQAQAVLQQTQLSMKG
PPGPVGLTGRPGPVGLPGHPGLKGEEGAEGPQGPRGLQGPHGPPGRVGKMGRPGADGARG
LPGDTGPKGDRGFDGLPGLPGEKGQRGDFGHVGQPGPPGEDGERGAEGPPGPTGQAGEPG
PRGLIGPRGSPGPTGRPGVTGIDGAPGAKGNVGPPGEPGPPGQQGNHGSQGLPGPQGLIG
TPGEKGPPGNPGIPGLPGSDGPPGHPGHEGPTGEKGAQGPPGSAGPPGYPGPRGVKGTSG
NRGLQGEKGEKGEDGFPGFKGDVGLKGDQGKPGAPGPRGEDGPEGPKGQAGQAGQEGPPG
SAGEKGKLGVPGLPGYPGRPGPKGSIGFPGPLGPIGEKGKLGKAGQPGLEGERGPPGSRG
ERGQPGATGQPGPKGDVGQDGAPGIPGEKGLPGLQGPPGFPGPKGPPGHQGKDGRPGHPG
QRGELGFQGQTGPPGPAGVLGPQGKTGEVGPLGERGPPGPPGPPGEQGLPGLEGREGAKG
DLGPPGPLGKEGPAGLRGFPGPKGGPGDPGSTGLKGDKGPPGPVGANGSPGERGPLGPAG
GIGLPGQSGSQGPVGPAGEKGSPGERGPPGPTGKDGIPGPLGPLGPSGAAGPSGEEGDKG
DVGAPGHKGSKGDKGDAGPPGQPGIRGPAGHPGPPGADGAQGRRGPPGLFGQKGDDGVRG
FVGVIGPPGLQGLPGPPGEKGEVGDVGSMGPHGAPGPRGPQGPSGSEGTPGLPGGVGQPG
AVGEKGEPGDAGDPGPPGAPGIPGPKGDIGEKGDSGPSGAAGPPGKKGPPGEDGAKGSVG
PTGLPGDLGPPGDPGVSGIDGSPGEKGDPGDIGGPGPPGASGEPGAPGPPGKRGPSGHMG
REGREGEKGAKGEPGPDGPPGRTGPMGARGPPGRVGPEGLRGIPGPVGEPGLLGAPGQMG
PPGPLGPSGLPGLKGDAGPKGEKGHIGLIGLIGPPGEAGEKGDQGLPGVQGPPGPKGDPG
PPGPIGSLGHPGPPGVEGPLGQKGSKGSPGSMGPRGDTGPAGPPGPPGPPAELHGLRRRR
RFVPVPLPVVEGGLEEVLASLTSLSLELEQLRRPPGTAERPGLVCHELHRNHPHLPDGEY
WIDPNQGCARDSFRVFCNFTAGGETCLYPDKKFEIVKLASWSKEKPGGWYSTFRRGKKFS
YVDADGSPVNVVQLNFLKLLSATARQNFTYSCQNAAAWLDEATGDHSRSARFLGTNGEEL
SFNQTTAATVSVPQDGCRLRKGQTKTLFEFSSSRAGFLPLWDVAATDFGQTNQKFGFELG
PVCFSS
NT seq
5241 nt
NT seq
+upstream
nt +downstream
nt
atggggaacggccggggcctgggctggccgcgggccggtctctgcctgctcctggccgcg
ctgcagcttctgccggggacgcaggcggatcctgtggatgtcctgaaggccctgggtgtg
cggggaggccaggctggggtccctgaggggcctggcttctgtccccagaggactccagag
ggtgaccgggcattcagagtgggccaggccagcacactaggcatccccacgtgggaactc
tttccagatggccactttcctgagaacttctccttgctgatcaccttgcggggccagcca
gccaatcagtctgtcctgctgtccatttatgatgaaaggggtgcccggcagttgggcctg
gcactgggcccagcgctgggtctcctaggtgaccccttccgcccccttccccagcaggtc
aacctcacagatggcaggtggcaccgtgtggcagtcagcatagatggtgagatggtgacc
ctggtagctgactgtgaagctcagccgcctgtcttgggccatggcccccgcttcatcagc
atagccggactcactgtgctggggacccaggaccttggggagaagactttcgagggagac
attcaggagctgctgataagcccagatcctcaggctgccttccaggcttgtgagcggtac
ctcctcgactgtgacaacctggtgccggcggccacaggggctccccaggatgaactagaa
acccctcgtcctcggcggaaggggaagggaaaagggaggaagaaagggcgacgtcgcaag
gggaagggcaggaaaaagaagaacaaggaaattttgacctcaagtccacctcctgactcc
ccagagaaccagacctccactgacatccccaagacagagactccagctccaaatctgcct
cctacccccacgcctttggtcgtcacctccactgtgactactggactcaatgccacgatc
ctagaggggagcttggaccctgacagtggaaccgagctggggaccccggagaccaaggca
gccaaggaggttgaagaaggagatgattccaccatgggccctgacttccgggcagcagaa
tatccgtctcggactcagttccagatctttcctggtgctggagagaaaggagcaaaagga
gagcctgcagtgattgaaaaggggcagcagtttgagggacctccaggagccccaggaccc
cgaggggtggttggcccctcaggccctcccggccccccaggattccctggcgaccctggt
ccaccgggccctgcgggcctcccaggaatccccggcattgatgggatccgaggcccccca
ggcactgtgatcatgatgccgttccagtttgcaggtggctcctttaaaggacccccagtc
tcattccagcaggcccaggctcaggcggttctgcagcagactcagctgtctatgaaaggc
ccccctggcccagtggggctcactgggcgcccaggccctgtgggtctccccgggcatcca
ggtctgaaaggagaggagggagcagaagggccacagggtccccgaggcctgcaaggacct
catggacccccgggccgagtgggcaagatgggccgccctggagcagatggggctcggggc
ctcccaggggacactggacctaagggtgatcgtggcttcgatggcctcccagggctgcct
ggtgaaaagggccaaaggggtgactttggccatgtggggcaacccggtcccccaggagag
gatggtgagaggggagcagagggacctccagggcccactggccaggcgggggagccgggt
ccacgaggactgattggccccagaggctctcctggccccacgggtcgcccgggtgtgact
ggaattgatggtgctcctggtgccaaaggcaatgtgggtcctccaggagaaccaggccct
ccaggacagcagggaaaccatgggtcccagggactccccggtccccagggactcatcggc
actcctggggagaagggtccccctggaaacccaggaattccaggcctcccaggatccgat
ggccctccgggtcacccaggacatgagggccccacgggagagaaaggggcccagggtcca
ccagggtcggcaggccctccgggctatcctggacctcggggagtgaagggcacttcaggc
aaccggggcctccagggggagaaaggcgagaagggagaggatggcttcccaggcttcaag
ggcgatgtggggctcaaaggtgatcaggggaaacccggagctccaggtccccggggagag
gatggtcctgaggggccgaaggggcaggcggggcaggctggccaggaggggcccccaggc
tcagctggggagaagggcaagcttggggtgccaggcctcccaggttatccaggacgccct
gggcctaagggatccattggatttcccgggcccctaggacccataggagagaaagggaag
ttgggaaaggcagggcagccaggcctggaaggagagcggggaccaccaggctcccgtgga
gagagggggcaaccgggtgccacagggcaaccaggccccaagggcgatgtgggccaggac
ggagcccctgggatccctggagaaaagggcctccctggtctgcaaggccctccaggattc
cctgggccaaagggtccccctggtcaccaaggtaaagatgggcgaccagggcaccctgga
cagagaggagaattgggcttccaaggtcagacaggccctcctggaccagctggtgtctta
ggccctcagggaaagacaggagaagtgggacctctgggtgaaagggggcctccaggcccc
cctggacctcctggtgaacaaggtcttcctggcctggaaggcagagagggggccaagggg
gacctgggaccaccaggaccccttgggaaggaagggccagctggactcaggggctttccc
ggccccaaggggggccctggggacccgggatctactggcttaaagggtgataagggcccc
ccaggacccgtgggggccaatggctcccctggtgagcggggtcctttgggcccagcagga
ggcattggacttcctggccaaagtggcagccaaggccccgttggccctgcaggcgagaag
gggtccccgggagaacgtggcccccctggccccactggcaaagatgggatcccagggccg
ctggggcctctgggaccctctggagctgctgggccttctggcgaggaaggggacaagggg
gatgtgggcgcccccggacacaaggggagtaaaggcgataaaggagatgcgggcccacct
ggacaaccagggatacggggtcctgcagggcacccaggtcccccgggagcagacggggct
caggggcgccggggacccccaggcctctttggtcagaaaggagatgacggagtcagaggc
tttgtgggggtgattggccctcctggactgcaggggctgccaggccctcctggagagaaa
ggggaggtcggagacgttgggtccatgggtccccatggagctccaggtcctcggggtccc
caaggccccagtggatcagagggcactccagggctgcctggaggagttggtcagccaggc
gccgtgggtgagaagggtgagccaggggacgctggagacccagggcctccaggagcccca
ggcatcccggggcccaagggagacattggtgaaaagggggactcaggcccatctggagct
gctggacccccaggcaagaaaggtccccctggagaggatggagccaaagggagcgtgggc
cccacggggctccccggagatctagggcccccaggagaccctggagtttcaggcatagat
ggttccccaggggagaagggagaccctggtgacattgggggaccgggtcctcctggagct
tctggggaacccggcgcccccgggccccccggcaagaggggtccttcaggccacatgggt
cgagaaggcagagaaggggagaaaggtgccaagggggagccaggtcctgatgggccccca
gggaggacgggtccaatgggggctcgagggccccctggacgtgtggggcctgagggtctt
cgagggatccccggccctgtgggtgaaccaggcctcctgggagcccctggacagatgggc
cctcccggccccctggggccctctggcctcccagggctgaagggagacgctggccccaag
ggagaaaagggccacattggattgatcggtctcattggtcccccgggggaagccggtgag
aaaggagatcaggggttgccaggcgtgcagggaccccctggtcccaagggagatcctggt
ccccctggtcccattggctctctgggtcaccctgggcccccaggtgtggagggccctctg
ggacagaaaggctcaaaggggtctccggggtccatgggcccccgtggagacactggacct
gcaggcccaccaggccccccgggtccccctgccgagctgcacgggttgcgcaggcgccgg
cgcttcgtcccagtccccctcccagtcgtggagggcggcctggaagaggtgctggcctcg
ctcacatcgctgagcttggagctggagcagctgcggcgtcctcctggcactgcggagcgc
ccgggcctcgtgtgccacgagctgcaccgcaaccacccgcacctgcctgatggggaatac
tggattgaccctaaccagggctgcgcgcgggactcgttcagggttttttgcaacttcacg
gcgggaggagagacctgcctctatcccgacaagaagttcgagatcgtgaaattggcctcc
tggtccaaggaaaagcctggaggctggtatagcacattccgtcgagggaagaagttctcc
tacgtggacgccgacgggtctccagtgaatgtcgtgcagctgaacttcctgaaactgctg
agtgccactgctcgccagaacttcacctactcctgccagaatgcggctgcctggctggac
gaagccacgggtgaccacagccgctccgcccgcttccttggcaccaatggagaggagctg
tccttcaaccagacgacagcagccactgtcagcgtcccccaggatggctgccggctccgg
aaaggacagacgaagacgctttttgaattcagctcttctcgagcgggatttctgcccctg
tgggatgtggcggccactgactttggccagacgaaccaaaagtttgggtttgaactgggc
cccgtctgcttcagcagctga
DBGET
integrated database retrieval system
