Nomascus leucogenys (northern white-cheeked gibbon): 115833129
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Entry
115833129 CDS
T03265
Symbol
COL18A1
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XVIII) chain
KO
K06823
collagen type XVIII alpha
Organism
nle
Nomascus leucogenys (northern white-cheeked gibbon)
Pathway
nle04974
Protein digestion and absorption
Brite
KEGG Orthology (KO) [BR:
nle00001
]
09150 Organismal Systems
09154 Digestive system
04974 Protein digestion and absorption
115833129 (COL18A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nle04147
]
115833129 (COL18A1)
00535 Proteoglycans [BR:
nle00535
]
115833129 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
nle00536
]
115833129 (COL18A1)
Exosome [BR:
nle04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
115833129 (COL18A1)
Proteoglycans [BR:
nle00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
115833129 (COL18A1)
Glycosaminoglycan binding proteins [BR:
nle00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
115833129 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Endostatin
Collagen
DUF959
Collagen_trimer
Fz
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
115833129
NCBI-ProteinID:
XP_030661868
LinkDB
All DBs
Position
25:30269704..30329399
Genome browser
AA seq
1760 aa
AA seq
DB search
MAPDPRGCHILLLLFCCLAAAQADLLNLNWLWFNNKDTSHAATTIPEPQGPLPVQPTADT
TTHVAPRNGSTEPATARGSPEPPSELLEDSQDTATFAESPDTPEENIAGVGAKILNVAQG
IRSFVQLWNDTVPTESLARAETLVLETPVGPLALPGPSSTPQENGTTLWPSRGTPSSPGA
HTTEAGTLPAPTPSPPSLGRPWAPLTGPSVPPPSSGRASLSSLLGGAPPWGSLQDPDSQG
LSPAAAAPSQHLQLPDVRLRTPLLHPLVTGSLGEHAAPSAFSSGLPGALSQVAVTTLIGD
SGAWVSHTANSAGPGLANNSALLGADPEAPAGRCLPLPSSLPVCGRLGISRFWLPNHLHH
ESGEQVQAGARAWGGLLRTHCHPFLAWFFCLLLAPPCGSVPPPAPPPCRQFCEALRDACW
SCLGGGQLPVACASLPTQEDGYCVFIGPAAERVSEEVGLLQLLGDPPPQQVTQTDDPDVG
LAYVFGPDANSGQVARYHFPSLFFHDFSLLFHIRPATEGPGVLFAITDSAQAVVLLGVKL
SGVQDGHQDISLLYTEPGAGQTHTAASFRLPAFIGQWTHLALSVEGGYVALYVDCEEFQR
MPLARSSRGLELEPGAGLFVAQAGGADADKFQGMIAELKVRGDPQVSPMHCLDEEGDDSD
GASGDFGSGLGDARELLREEMGTALKPRLPTPPPVTTPPLAGGSSMEDSRSEGIEEQTTV
ASLGAQTLPGSDSVSTWDGSVRNPGGRMKEGGLKGQKGEPGVPGPPGRAGPPGSPCLPGP
PGLPCPVSPLGPAGPALQPVPGPQGPPGPPGRDGTPGRDGEPGDPGEDGKPGDTGPQGFP
GTPGDIGPKGDKGDPGVGERGPPGPQGPPGPPGPSFRHDKLTFIDMEGSGFGGDLEALRG
PRGFPGPPGPPGVPGLPGEPGRFGVNSSDIPGPAGLPGVPGREGPPGFPGLPGPPGPPGR
EGPPGRTGQKGSLGEAGAPGHKGSKGDPGPAGARGESGLAGAPGPAGPPGPPGPPGPPGP
GLPAGFDDMEGSGGPFWSTARGADGPQGPPGLPGLKGDPGMPGLPGARGEVGADGAPGFP
GLPGREGIAGPQVSRLGGPRGDRGSQGEKGECPWDPGKDGVGQPGLPGPPGPPGPVVYVS
EQDGSVLSMPGPEGRPGFAGFPGPAGPKGDLGSKGERGSPGPKGEKGEPGSIFSPDGGVL
GPAQKGAKGEPGFRGPPGPYGRPGYXGEIGFPGRPGRPGMNGLKGEKGEPGDASLGFGMR
GMPGPPGPPXPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKGTKGEVGPPGPPGQ
FPFDFLQLEAEMKGEKGDQGDAGQKGERGEPGGGGFFGSSLPGPPGPPGPPGYPGIPGPK
GESIRGQPGPPGPQGPPGIGYKGRQGPPGPPGPPGPPSFPGPHRQTISVPGPPGPPGPPG
PPGTMGASSGVRLWATRQAMLGQVHEVPEGWLIFVAEQEELYVRVRNGFRKVQLEARTPL
PRGTDNEVAALQPPVVQLHDSNPYPRRAHSHPTARPWRADDILASPPRLPEPQPYPGAPH
HSSYVHLRPARPTSPPAHTHRDFQPVLHLVALNSPLSGSMRGIRGADFQCFQQARAVGLA
GTFRAFLSSRLQDLYSIVRRADRAAVPIVNLKDELLFPSWEALFSGSEGPLKPGARIFSF
DGKDVLRHPTWPQKSVWHGSDPNGRRLTESYCETWRTEAPSATGQASSLLGGRLLGQNAA
SCHHAYIVLCIENSFMTASK
NT seq
5283 nt
NT seq
+upstream
nt +downstream
nt
atggctcccgacccccgcggctgccacatcctgctgctgctcttctgctgcctggcggct
gcccaggccgacctgctgaacctgaactggctttggttcaataataaggacaccagccac
gcagctaccacgatccctgagccccaggggcccctgcctgtgcagcccacagcagacacc
accacacacgtggccccccggaatggttccacagagccagcaacagcccgtggcagccct
gagccaccctcagagctcctggaagacagccaggacaccgccacttttgccgagagcccg
gacacaccagaggagaacattgccggtgtcggagccaagatcctgaacgtggcccaaggc
atccggagcttcgtccagctgtggaatgacactgtccccactgagagcttggccagggca
gaaacgctggtccttgagactcccgtgggcccccttgccctccctgggccttccagcacc
ccacaggagaatgggaccactctctggcccagccgtggcactcccagctctccgggcgcc
cacacgaccgaggctggcaccctgcctgcgcccaccccatcgcctccctccctgggcagg
ccctgggcaccactcacggggccctcagtgccaccaccgtcctcaggtagagcttctctc
tcctccttgctgggcggggcccctccctggggaagcctgcaggacccagacagccaagga
ctctcacccgccgcagccgctccgagccagcatctccagctccctgacgtccgcctgcgc
acgccacttctgcaccccctggtgacgggctccctgggcgagcacgcggccccctctgcc
ttctcctctgggctcccgggcgcactgtctcaggttgcagtcaccactttaatcggggac
agcggtgcttgggtctcccacacggctaactctgcggggccgggtcttgctaataactct
gccctgctcggggctgatcccgaggcccccgccggtcgctgcctgcccctgccatcctcc
ctgccggtctgcggccgcctgggcatctcacgcttctggctgcccaaccacctccaccac
gagagcggcgagcaggtgcaggccggggcgcgggcgtgggggggcctgctgcggacgcac
tgccaccccttcctcgcctggttcttctgcctgctgctggcccccccatgcggcagcgtc
ccgccgcccgccccgccaccctgccgccagttctgcgaggccctgcgggatgcgtgttgg
agctgcctaggcgggggccagctgcctgtcgcctgcgcctcactcccgacccaggaggac
gggtactgtgtgttcattgggccggctgcagagcgcgtcagcgaggaggtggggctgctg
cagctccttggggaccccccgccccagcaggtcacccagacggatgaccctgatgtcggg
ctggcctacgtctttgggccagatgccaacagtggccaagtggcccggtaccacttcccc
agcctcttcttccatgacttctcactgctgttccacatccggccagccacagagggcccg
ggggtgctgttcgccatcacggactcggcgcaggccgtggtcttgctgggcgtgaagctc
tctggagtgcaggacgggcaccaggacatctccctgctctacacggaaccaggtgcgggc
cagacccacacagccgccagcttccggctccccgccttcatcggccagtggacacactta
gcactcagcgtggagggtggctatgtggccctctacgtggactgtgaggagttccagaga
atgccgcttgctcggtcctcacggggcctggagctggagcctggcgccgggctcttcgtg
gctcaggcaggaggagcggatgctgacaagttccaggggatgatcgctgagctgaaggtg
cgcggggacccccaggtgagccccatgcactgcctggacgaggaaggcgatgactcagat
ggggcatccggagactttggcagcgggctcggggacgcccgggagcttctcagggaggag
atgggcacggccctaaaacccaggctccccacgccacccccggtcaccactccacccttg
gctggaggcagcagcatggaagattccagaagtgaaggaatcgaggagcagaccacagtg
gcttcgttaggagctcagacacttcctggctcagattctgtctccacgtgggacgggagt
gtccggaaccctgggggccgcatgaaagagggcggcctgaaggggcagaaaggggagcca
ggtgttccaggcccacctggccgagcaggccccccaggatccccatgcctgcctggtccc
ccgggtctcccgtgcccagtgagtcccctgggtcctgcaggcccagcgttgcaacctgtc
cccggaccacaaggacccccagggcctccggggagggacggcacccctggaagggacggt
gagccgggcgaccctggtgaagatggaaagccgggcgacactgggccacagggcttcccc
gggactccaggggacataggccccaagggcgacaagggagaccctggggttggagagaga
gggcccccaggaccccaagggcctccggggcccccaggaccctccttcagacatgacaag
ctgaccttcattgacatggaggggtctggcttcggtggcgatctggaggccctgcggggt
cctcgaggcttccctggaccccccggaccccctggtgtcccaggcctgcccggcgagcca
ggccgcttcggggtgaacagctccgacatcccagggcccgccggccttcctggtgtgcct
gggcgcgagggtccccccgggtttcccggcctcccgggacccccaggccctccgggaaga
gaagggcccccaggaaggactgggcagaaaggcagcctgggtgaagcaggcgccccagga
cataaggggagcaagggagaccccggtcctgctggtgctcgtggagagagcggcctggca
ggagcccctggacccgctggaccaccaggcccccctgggccccctgggccaccaggacca
ggactccccgctggatttgatgacatggaaggctccggggggccgttctggtcaacagcc
cgaggcgctgatgggccgcagggaccccccggcctgccgggactcaagggggatcctggc
atgcctgggctgccaggggcccggggagaagttggagcagatggagcccctgggttcccc
ggcctccctggcagagagggcattgctgggccccaggtgagccgccttggtgggcccagg
ggagacagaggcagccagggagaaaaaggtgagtgtccctgggatccagggaaggacgga
gttggtcagccgggcctccctggcccccccggacccccggggcctgtggtctacgtgtcg
gagcaggacggatccgtcctgagcatgccgggacctgagggccggccgggtttcgcaggc
tttcccggacctgcaggacccaagggcgacctgggctctaagggcgaacgaggctccccg
ggacccaagggtgagaagggtgaaccaggcagcatcttcagccccgatggtggtgtcctg
ggccctgcacagaaaggagccaagggagagccgggcttccgaggacccccgggtccatat
ggacggccggggtacnaaggagagattggctttcctggacggccgggtcgccccgggatg
aacggattgaaaggagagaaaggggagccgggagatgccagccttggatttggcatgagg
ggaatgcccggccccccagggcctccanggcccccaggccctccagggactcctgtttac
gacagcaatgtgtttgctgagtccagccgccctgggcctccaggattgccagggaatcag
ggccctccaggacccaagggcaccaaaggagaagtgggtccccccggaccaccagggcag
tttccgttcgactttcttcagttggaggctgaaatgaagggggagaagggagaccaaggt
gatgcaggacagaaaggcgaaaggggtgagcccgggggtggcggcttcttcggctccagc
ctgccaggcccccccggacccccaggcccacctggctaccctgggattccaggtcccaag
ggagagagcatccggggccaacccggcccacctggacctcagggaccccccggcatcggc
tacaaggggcgccagggccctcctggccccccaggccccccagggcccccttcatttccc
ggccctcacaggcagactatcagcgttcccggtcctccgggcccccccgggccccccggg
ccccctggaaccatgggcgcctcctcaggggtgaggctctgggctacacgccaggccatg
ctgggccaggtgcacgaggttcccgagggctggctgatcttcgtggccgagcaggaggag
ctgtacgtccgcgtgcggaatgggttccggaaggtccagctggaggcccggacgccactc
ccccgagggacggacaacgaagtggccgccttgcagccccccgtggtgcagctgcacgac
agcaacccctacccgcggcgggcacactcccaccccaccgcgcggccctggcgggcagat
gacatcctggccagtccccctcgcctgccggagccccagccctacccaggagccccgcac
cacagctcctacgtgcacctgcggccggcgcgacctacaagcccacccgcccacacccac
cgcgacttccagcccgtgctccacctggttgcgctcaacagcccactgtcaggcagcatg
aggggcatccgcggagccgacttccagtgcttccagcaggcgcgggccgtggggctggcg
ggcaccttccgcgccttcctgtcctcgcggctgcaggacctgtacagcatcgtgcgccgc
gccgaccgtgcagccgtgcccatcgtcaacctcaaggacgagctgctgtttcccagctgg
gaggctctgttctcaggctctgagggtccgctgaagcccggggcacgcatcttctccttt
gacggcaaggacgtcctgaggcatcccacctggccccagaagagcgtgtggcatggctcg
gaccccaacgggcgcaggctgaccgagagctactgtgagacatggcggacggaggccccc
tcggccacaggccaggcctcctcgctgctggggggcaggctcctggggcagaatgccgcg
agctgccatcacgcctacatcgtactctgcatcgagaacagcttcatgactgcctccaag
tag
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