Natrialba magadii: Nmag_0608
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Entry
Nmag_0608 CDS
T01176
Symbol
ligB
Name
(GenBank) DNA ligase (ATP)
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
nmg
Natrialba magadii
Pathway
nmg03030
DNA replication
nmg03410
Base excision repair
nmg03420
Nucleotide excision repair
nmg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nmg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Nmag_0608 (ligB)
03410 Base excision repair
Nmag_0608 (ligB)
03420 Nucleotide excision repair
Nmag_0608 (ligB)
03430 Mismatch repair
Nmag_0608 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nmg03032
]
Nmag_0608 (ligB)
03400 DNA repair and recombination proteins [BR:
nmg03400
]
Nmag_0608 (ligB)
Enzymes [BR:
nmg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Nmag_0608 (ligB)
6.5.1.6 DNA ligase (ATP or NAD+)
Nmag_0608 (ligB)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
Nmag_0608 (ligB)
DNA replication proteins [BR:
nmg03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
Nmag_0608 (ligB)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
Nmag_0608 (ligB)
DNA repair and recombination proteins [BR:
nmg03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
Nmag_0608 (ligB)
NER (nucleotide excision repair)
Other NER factors
Nmag_0608 (ligB)
MMR (mismatch excision repair)
Other MMR factors
Nmag_0608 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
ADD04194
UniProt:
D3SYT3
LinkDB
All DBs
Position
complement(600229..602061)
Genome browser
AA seq
610 aa
AA seq
DB search
MEFATFADRAATIEAESADLEIVAHVRDLLAEAGDDLPIVARFVQGRVFPAWDSTTLDIG
PNTCYEAIARAAGTNVDADDVEERLADRGEIGAVAASYDFGGQQGLGAFMSGGGSGAGGA
VDNNDDQDDRNNGGNGSNSGNDSNSSNDSNSSNGTGDLTVREINDTLTDLAAAEGSGSQD
RKVDLLFGLFNRCSSDEARYLARLVLSEMRIGVGEGTVRDAIAEAFEVPQEPVERALQVS
NDYGQVAETAREDGVDGLDEIDLEIGRPVQAMLAQAGTVTDALEEWDEAAVEWKYDGARI
QLHYDPAGPGGPDGDSNGETHVFSRNMEAVTDALPEVVEFADEHLDGPAILDGEVVAIDD
DGNPLPFQEVLKRFRRKHDVAKARENVSVRPVFFDCLHADGDDLLEEPLVERHNQLESVL
AMGPQQEPEEIDGFSLLWVTDNPDEIEAVDADALEAGHEGIMLKNPDSAYSPGRRGKNWQ
KRKPDVETLDCVVTGAEWGEGRRATFLGTFELSVRDGDDLETVGKVATGITDEKLEELTE
LLEPHIVAEDGTAVELEPAVVFEVGYEEIQTSPTYSSGYALRFPRFLGVRYDKDTAGAET
LERLETLFES
NT seq
1833 nt
NT seq
+upstream
nt +downstream
nt
atggagttcgccacgttcgcagaccgcgccgccacgatcgaggccgaatccgcggatctc
gagatcgttgcccacgtccgcgacctgctcgcagaggccggcgacgatctcccaatcgtc
gcccggttcgtccagggccgggtcttcccagcctgggactcgaccacgctcgatatcggg
ccaaacacctgctacgaggctatcgcccgtgcagcggggacgaacgtcgacgcagacgac
gtggaggagcgactcgccgaccgcggcgaaatcggtgcggtggcggcgagctacgacttc
ggcggccagcaggggttgggtgcgttcatgagcggcggtggcagtggcgctggtggtgct
gtcgacaacaatgacgaccaggacgaccgcaacaacggcggcaacggcagcaacagcggc
aacgacagcaacagcagcaacgacagcaacagcagcaacggcaccggcgacctcaccgtc
cgcgaaataaacgacacccttaccgacctcgcggccgccgaaggctcgggcagccaagac
cggaaggtcgacctcctcttcgggctgttcaaccgctgctcgagcgacgaagcgcgctac
ctcgctcgcctcgtcctctccgaaatgcgcatcggcgtcggcgagggtaccgtccgggac
gccatcgccgaggccttcgaggttccccaagagccggtcgaacgcgcactccaggtctcg
aacgactacggccaggtcgcggaaaccgcccgcgaggacggcgtcgacggactcgacgag
atcgacctcgagatcggtcgcccagtccaggccatgctcgcgcaggcggggacggttacg
gatgcactcgaggagtgggacgaggctgcggtcgagtggaagtacgacggggcgcgaatc
cagttacactacgatccagcaggccctggcggtccagacggcgacagcaacggcgagacg
cacgttttctcccggaacatggaagcggtcaccgacgcactcccggaggtcgtcgagttt
gccgacgaacacctcgacggccccgcgattctggacggcgaggtcgtcgcgattgacgac
gatggcaaccccttgccgtttcaggaggtgctcaagcgcttccggcgcaagcacgacgtg
gcgaaagcccgcgaaaacgtctctgttcgcccagtcttcttcgactgtctccacgccgac
ggcgacgacctcctcgaggagccactggtcgagcgacacaaccaactcgagtcggtgctc
gcgatgggcccccagcaagaacccgaagagatcgacggcttctcgctgctgtgggtcacc
gacaaccctgacgaaatcgaggccgtcgacgcggacgcactcgaggccggccacgagggg
ataatgctcaagaaccccgattcagcgtactcgccgggccggcgcggaaagaactggcag
aagcgcaaaccggacgtcgagacgctcgactgcgtcgtcaccggtgcggagtggggcgag
ggacggcgggcgacgttcctcgggacgttcgagctctcggttcgcgacggcgacgacctg
gaaacggtcggcaaggtcgcgacgggcatcacggacgagaaactcgaggaattgacggaa
ctgctggaaccccacatcgtcgcggaggacggaacggcggtcgaactcgagccggccgtc
gttttcgaggttggctacgaggagatccagacgtcgccgacgtactcgtcgggctatgca
ctgcgattcccgcgattcctgggtgtacgatacgacaaggatactgcgggagcggagacg
ctcgagcgactcgagacgctgttcgaatcgtag
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