Nakamurella multipartita: Namu_0128
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Entry
Namu_0128 CDS
T00991
Name
(GenBank) DNA polymerase LigD, polymerase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
nml
Nakamurella multipartita
Pathway
nml03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nml00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Namu_0128
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nml03400
]
Namu_0128
Enzymes [BR:
nml01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Namu_0128
DNA repair and recombination proteins [BR:
nml03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Namu_0128
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
ACV76562
UniProt:
C8XIX5
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All DBs
Position
143350..145845
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AA seq
831 aa
AA seq
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MAADSATVEVDGHRIALTHLRKVLYPASGTTKSEVIAYFAEVAHAMIPHLADRPVTRKRW
PDGVTTAPFFHKDLPKGTPSWVPRRTIRHSDGPKDYPLVDSPATLAWLGQIAALELHVPQ
WTFGSAAASVAGGDGEITEAVFDAVHPNRLVFDLDPGPGVELVDCAHVARAVRERMGGAA
LVPVTSGSKGIHLYAWLDGSLTSDDASAYAREIAEAIEQDMPDLVVSRMAKSLRRGKVFI
DWSQNNGSKTTIAPYSLRGREHPTVAAPRTWEELADPELRHLEYTEVLELLAAAPDPMQG
LEDGDNDGAETRGGSRRRGRGPDTKLDTYRSMRSADKTPEPVPEPGLLPQGDDDTFVIQE
HHARRLHYDFRLERDGVLVSWAVPKGVPESTGRNHLAVHTEDHPMDYADFAGEIPHGEYG
GGTVSIWDRGTYATEKWREDEVIIVLHGGKARGRYALIRTGGKNWLMHRMKDQSPQPKQY
DDHRPATPTAPVTARPAPARSTRPEPPKDLRPMLATAGSVEDVADERRWRFEGKWDGIRA
IATVGPSGLTLRSRLGNDVTPTYPELAVLAELLDGHSAVLDGEIVALQDGRTSFHEMQKR
MNVQRARDVARVMRDVPVQFWIFDVLNLDGISLLDKRYDDRRRILEALPLTGGVCLVPPQ
LAGPARDALRGSADRQWEGIVAKLGDSTYQPGRRSHSWLKIKNFLDLEVVVVGWSPGTGR
REGTVGALLLAVPDGAGGLRYAGKVGTGFTDAILDQLMQALAPLRADRSAVADTIPRADA
AGAIWVRPELVGEVKYGQWTPERRLRATSWRGLRPDKTVADLIAGSAPPPS
NT seq
2496 nt
NT seq
+upstream
nt +downstream
nt
atggccgcagacagcgcgacggtcgaggtggacggtcaccggatcgcgttgacccatctg
cgcaaggtgctctatccggccagcggcaccaccaaatcggaggtgattgcctacttcgcc
gaggtcgcgcacgcgatgatcccgcacctggccgaccgtccggtgacccgcaaacggtgg
cccgacggggtcaccaccgcgccgttcttccacaaggacctgcccaagggcacgccgagc
tgggtgccgcggcggaccatccggcattccgacgggcccaaggactacccgctggtcgac
tcaccggccacgctggcctggttgggacagatcgccgccctggaactgcatgtgccgcaa
tggacctttgggtccgcggcggcgtcggtggccgggggtgatggtgagatcaccgaggcc
gtcttcgatgccgtgcatccgaaccggttggtgttcgacctcgatccgggaccgggggtc
gagctggtcgactgcgcgcacgtcgcccgggccgtccgcgagcggatgggcggcgcggcg
ctggtcccggtcaccagtggttccaaggggatccatctctacgcctggctggacgggtcg
ctgacctcggacgacgcttcggcctacgcgcgggagatcgccgaggcgatcgagcaggac
atgccggatctggtggtctcccggatggccaagtcgctgcgccgcgggaaggtgttcatc
gactggtcgcagaacaacggctccaagaccaccatcgcgccctactcgttgcgcgggcgg
gagcaccccaccgtggcggccccacggacctgggaggagctggccgaccccgaactgcgg
cacctggagtacaccgaggtgctcgaactgctggccgccgcgccggatcccatgcagggc
ctggaggacggcgacaacgacggcgccgagactcgcggcggctcccggcggcgggggcgc
gggccggacaccaagctggacacctaccgatccatgcggtcggccgacaagaccccggaa
ccggtgcccgagccgggcctgctgccgcagggagacgacgacacgttcgtcatccaggag
catcacgcgcggcgactgcactacgacttccggctcgaacgcgacggggtgctcgtctcc
tgggccgtgccgaagggggtgccggagagcaccggtcgcaatcatctggccgtgcacacc
gaggaccatccgatggactacgccgacttcgccggcgagatcccgcacggcgagtacggc
ggcggcacggtcagcatctgggaccgcggcacctatgccaccgagaaatggcgtgaggac
gaggtcatcatcgtgctgcacggcggcaaggcccgcggccgctacgcgctgatccgcacc
ggtggcaagaactggctgatgcaccggatgaaggaccagagcccccagcccaagcagtac
gacgaccaccgtccggccacgcccaccgccccggtcaccgcccggccggccccggcccgg
tcgacccggcccgagccgccgaaggatctgcggccgatgcttgccaccgccggctcggtc
gaggacgtggccgacgagcggcgctggcggttcgagggcaagtgggacggtatccgggcc
atcgccaccgtcgggccgtcgggattgaccctgcgcagccggctcggcaacgacgtcacc
cccacctatcccgagctggccgtgctggccgagctgctcgacgggcacagcgcggtgctc
gacggtgagatcgtcgccctgcaggacgggcggaccagcttccacgagatgcagaagcgg
atgaacgtgcaacgggccagggacgtggcccgggtgatgcgcgacgtgccggtgcagttc
tggatcttcgacgtgctcaacctggacggcatctccctgctggacaagcgctatgacgat
cgccgccggatcctggaggcgctgccgttgaccggcggggtctgcctggtgccgccgcag
ctggccggtccggcgcgggatgcgctgcgcggcagcgccgaccggcagtgggagggcatc
gtcgccaagctcggcgattcgacctaccagcccggccgccgctcccactcctggctcaag
atcaagaacttcctcgacctggaggtggtggtcgtcggctggtcacccggcaccggtcgc
cgggaggggaccgtgggggcgctgctcctggccgtcccggacggcgccggaggcctgcgc
tacgccggcaaggtgggcaccggcttcaccgatgcgatcctggaccagctgatgcaggcg
ctcgccccgctgcgcgccgaccgctcggccgtcgccgataccatcccgagagccgatgcg
gccggagcgatctgggtccgccccgaactcgtgggcgaggtcaagtacggccagtggacc
cccgagcgccggttgcgcgccaccagctggcgaggcctgcggccggacaagacggtcgcc
gacctcattgccggctccgccccgcccccttcctga
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