Nipponia nippon (crested ibis): 104013722
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Entry
104013722 CDS
T05756
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
nni
Nipponia nippon (crested ibis)
Pathway
nni03013
Nucleocytoplasmic transport
nni03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
nni00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
104013722 (UPF1)
03015 mRNA surveillance pathway
104013722 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nni03019
]
104013722 (UPF1)
Enzymes [BR:
nni01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
104013722 (UPF1)
5.6.2.5 RNA 5'-3' helicase
104013722 (UPF1)
Messenger RNA biogenesis [BR:
nni03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
104013722 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
104013722 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
104013722
NCBI-ProteinID:
XP_009464534
LinkDB
All DBs
Position
Unknown
AA seq
1064 aa
AA seq
DB search
MDKAQGVSVLPKRFECEAEGGWVNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYY
TKDLPVHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDG
PLGETVLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQ
DRCFLSWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLL
RYEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDM
RLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFV
WKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHS
QVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKI
HQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKR
YRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGA
KQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSN
IFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVE
KITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREK
DFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKE
QKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGR
PSNMYFQTHDQIGMISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGK
TGRGGRQKNRFGIPGTSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQ
PELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3195 nt
NT seq
+upstream
nt +downstream
nt
atggacaaggcgcagggtgtcagcgtgttacctaagcggtttgagtgcgaggctgaagga
ggctgggttaatggacctgatggcattctacagaatggagctgtggatgataacgtggct
aaaaccagccagcttctggcagaattgaattttgaagaagatgaagaagatacctattac
acaaaggatcttcctgtgcatgcttgcagttactgtggtatccatgaccctgcttgtgtg
gtttactgtaacaccagcaaaaagtggttctgtaatgggcgcggaaatacatctggcagc
cacattgttaatcatcttgtgagagcgaagtgcaaagaggtgactctccataaagatgga
cctctaggagagactgtcttggaatgttataactgcggatgtcgtaatgtgtttctcctt
ggctttattccagctaaggcagactctgtggtggttttgctgtgcaggcagccatgtgcc
agccagagcagtttaaaggatattaattgggacagttcacagtggcagcctcttatccaa
gatcgctgtttcctttcatggctggtaaagattccatctgaacaggaacagttgagagca
cgtcagattacagctcaacagattaacaaactggaagaactttggaaggaaaatccatct
gcaacccttgaggacttagaaaagcctggtgttgatgaagaaccacagcatgtcctgctt
agatatgaagatgcttatcaataccaaaatatatttggtcctctagtcaagcttgaggca
gattatgacaagaaactcaaggagtctcagacccaagataacatcacggtcagatgggac
ctgggcttgaacaagaaacgaattgcttatttcactttgccaaagactgattcagatatg
cgtcttatgcaaggagatgagatctgcttgaggtataaaggagacctggcccctttgtgg
aagggaattggtcatgttatcaaagttcctgataattatggtgatgagatagccattgag
ctgaggagcagcgttggagcgcctgtggaagttactcataacttccaagtggattttgtg
tggaagtctacttcgtttgacagaatgcagagtgctttaaaaacatttgctgtggatgag
acttcagtgtctgggtacatctatcacaaactattaggtcatgaggtagaagatgtaatt
attaaatgccagttgccaaagcgctttacagcacaaggacttcctgatctcaaccattct
caggtttatgctgtgaagactgtcctgcagcgtcctctgagccttattcagggtccccct
ggtactggaaaaacagtgacatcagccacaatcgtctatcatctggctagacagggcaat
gggcctgtgttagtctgtgctccaagtaatatagctgtagatcagttgactgagaagatc
catcaaactggactgaaagtggttcgtctgtgtgctaaaagtcgtgaggcaattgactct
cctgtgtccttcttggcattgcataaccagatcagaaacatggatagcatgccagagctt
cagaaactgcagcagcttaaagatgaaaccggagaactgtcatctgctgatgagaaacgt
taccgtgcactgaaacgaacagcagagcgtgaattacttatgaatgcagatgtgatctgt
tgcacgtgtgtgggagctggtgatccaagacttgcaaaaatgcagttccgctccattctg
atcgatgaaagcacgcaggctactgagccagagtgcatggtgccagttgtcctgggagca
aagcagcttattcttgtaggtgaccactgccagcttggtcctgttgtgatgtgtaaaaaa
gctgcaaaggctggcctatctcagtctctctttgagaggcttgtggtgctggggattcgt
ccgatccgcctgcaagtgcagtatcgcatgcatcccgcactcagtgcttttccatccaat
atcttctatgagggttcgctccagaatggtgttactgcagccgaccgtgtgaaaaagggg
tttgatttccagtggccacagccagataagccaatgtttttctatgttacacaaggacag
gaagaaattgccagctcgggcacttcttacttgaacaggacggaagctgccaatgtggag
aagataactacaaagctattgaaagctggtgccaaaccagatcagattggcattattact
ccttacgaaggtcaacgatcctatctggtgcagtacatgcaattcagtggttccttgcat
acaaagctctaccaggaagtggaaattgcaagtgtggatgccttccagggacgagagaag
gactttattatcctttcttgtgtgagggccaacgaacaccaaggaatagggtttctgaat
gaccccaggcgtcttaatgtagctcttacaagagcaaggtatggagtaattattgttggg
aacccaaaagcgctgtctaaacaacccctttggaatcacctgctgaattactacaaggag
cagaaggttctggtggagggaccactgaataacctccgggaaagccttatgcagttcagc
aagccccggaaacttgtcaataccatcaacccaggtgcccggttcatgactactgccatg
tacgatgcacgtgaggctattattccaggatctgtctatgaccggagcagtcaagggcgc
ccatccaacatgtacttccagacccacgaccagatcgggatgattagtgctggccccagc
cacgtcactgctatgaacattcctatccctttcaaccttgtgatgccaccgatgccacca
ccgggatactttggccaggcgaacggaccagccgcaggacgtggggcgccaaaaggaaag
actggtcgtggtgggcgccagaaaaatcgttttggaattcctggaactagtcagtcaaac
cttccaaatagtcaagcgagccaagatgtggtgtcccagcctttctcccagggtccactg
actcagggctatatctccatgagtcagccatcacagatgagtcagcctgggctctcccaa
ccagaattatcacaggacagttaccttggtgatgagtttaaatctcagattgacgtggcg
ctgtcacaggactctacttaccagggtgaacgtgcatatcaacatggcggagtgacggga
ctgtcacagtattag
DBGET
integrated database retrieval system
