Nocardia nova: NONO_c07420
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Entry
NONO_c07420 CDS
T03032
Name
(GenBank) putative ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
nno
Nocardia nova
Pathway
nno03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nno00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NONO_c07420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nno03400
]
NONO_c07420
Enzymes [BR:
nno01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NONO_c07420
DNA repair and recombination proteins [BR:
nno03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NONO_c07420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
AHH15550
UniProt:
W5T891
LinkDB
All DBs
Position
802813..805104
Genome browser
AA seq
763 aa
AA seq
DB search
MAARRDFGGIEVGLTNLDKVLYPATGTTKGEVIDYFTAIAPALLPHIADRPVTRKRWPGG
VDATSFFEKNLPTHAPAWIPRKQIQHSDRRVTYPLIDSVAGLAWIGQQAALEIHVPQWCF
DGAAPGPVTRLVFDLDPGPGVGLADCALVALWIRDTVRDVGLDAYPVTSGSKGIHVYVPL
DRVLSPGGASTVAKQLATGLEQVHPELVTATMAKAARPGKIFLDWSQNNPSKTTIAPYSL
RGRAHPTVAAPRGWEEIEDRERLRHLTFGEVLERWRTDGDLLSGLDKPRDSGSPDPLGAY
RSMRDPARTPEPVPAGRPDPGPGDRFVVQEHHARRLHWDVRMERDGVLVSWAVPKGPPTE
PSQNRLAVHTEDHPLEYLHFHGDIPRGEYGAGAMTIWDSGTYETEKWRDDEVIVRFHGQR
LSGRYAFIRTGGKQWLMHLMKSQAGDSGAPDDRGVPATDDGAAPVRGGTAGVPRGLSPML
ATPGDVAKLDARDWVFETKWDGFRIITEIDRGELVVRSRAGNTVTDRYPRLAALGRELGT
HRVVLDGEAVVFDADGIANLALLQSNAAQAVLVAFDVLYLDGTSLLRKRYTDRRRVLEAL
AARAPALFVPPQLDGPGAQALAYSREHGLEGVVAKRKDSVYLPGRRGQSWIKTRNWRTQE
VLVGGWRRSAAREFASLLVGMRYEGKLYYIGRVGTGFGDRQMAELSARLRDLRRDTSPFA
NELTADERKDAVWVEPRMTGTVRYMNWTESGRLWHPAWLGSGK
NT seq
2292 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcgccgcgatttcgggggcatcgaggtcggtctgaccaacctcgacaaggtc
ctgtatcccgcgaccggtaccaccaagggtgaggtgatcgactacttcaccgccatcgcc
ccggccctgctgccgcatatcgccgatcgtccggtcacgcgcaagcgctggccgggcggc
gtggacgcgacgtcgttcttcgagaagaatctccccacgcacgcaccggcctggattccg
cgcaagcagattcagcattcggatcgccgggtgacctatccgctcatcgactcggtggcg
gggctggcctggatcgggcagcaggcggcgctggaaatccatgtgccgcaatggtgtttc
gacggtgcggcgcccggtccggtgacccggctggtcttcgatctggatccggggcccggc
gtggggctggccgattgcgcgctggtggccctgtggatacgcgataccgtgcgcgatgtg
gggctggacgcctatccggtcaccagtggtagcaagggaattcacgtctatgtgccgctg
gatcgggtgctgagtccgggcggtgcgtcgacggtcgccaaacagctggccaccggattg
gagcaggtgcatccggagttggtgaccgcgacgatggcgaaggccgcgcgaccgggcaag
atcttcctcgactggagtcagaacaatccgtcgaagaccaccatcgcaccgtattcgctg
cgcgggcgcgcacatccgaccgtggcggcgccgcgcggctgggaggagatcgaggaccgg
gaacggttgcggcacttgaccttcggggaggtgctcgagcggtggcggaccgacggtgac
ctgctgtccggtctggacaagccgcgcgattccgggtcgccggatccgctgggggcctat
cggtcgatgcgggatccggcccgcacgcccgagcccgttccggcgggccgccccgatccg
gggccgggggaccgcttcgtggtgcaggaacatcatgcgcggcggctgcactgggacgtc
cggatggaacgcgacggggtgctggtgtcgtgggcggtgcccaaggggccgccgaccgag
ccgtcgcagaatcggctggccgtgcacaccgaggatcacccgctcgaatatctgcacttc
cacggcgatattccgcgcggcgaatacggcgccggagcgatgacgatctgggattccggc
acctacgagaccgagaagtggcgcgacgacgaggtcatcgtgcgattccacgggcagcgg
ctgagcgggcggtacgcgttcatccgcaccggcggcaagcagtggctgatgcatctgatg
aagtcgcaggcgggcgactccggcgcaccggacgatcgcggtgtcccggcgacggatgat
ggcgccgcacccgtccggggcgggaccgccggtgttccacgcggcctgtcacccatgctc
gcgacaccgggcgatgtcgcgaaactcgatgcgcgcgactgggttttcgaaacgaagtgg
gacggattccggatcatcaccgaaatcgaccgtggtgagctggtggtgcgcagccgggcc
ggtaataccgtgaccgatcgctatccgcggctggcggctctcgggcgtgaactcggcacg
caccgcgtcgtactcgacggtgaggcggtggtgttcgacgccgacggaatcgccaatctc
gcactgctgcaatcgaatgcggcgcaggcggtcctggtcgccttcgatgtgctgtacctg
gacggcacctcactgctgcgcaagcgctacaccgatcggcggcgggtgctcgaggcgctg
gccgctcgcgcgcccgcactgttcgtgccgccgcaactggacgggccgggtgcgcaagcg
ctggcgtacagccgcgagcacgggctcgagggggtggtggccaagcgcaaggattcggtg
tacctgccggggcggcgcgggcagtcctggatcaagacccggaactggcgcacccaggaa
gtgctcgtgggcggctggcggcgcagtgccgcaagggaattcgcctccctgctggtcggg
atgcgatacgaggggaagctgtactacatcggccgcgtcggcacgggattcggtgatcgg
cagatggcggaactgagtgcgcgcctgcgggatctgcgccgcgacaccagtccgttcgcg
aacgagctcaccgccgacgagcggaaggacgcggtctgggtggaaccgcggatgaccggc
accgtgcggtacatgaactggacggaatccggccgactgtggcatccggcgtggcttggt
tcgggaaagtag
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