Nocardia nova: NONO_c26310
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Entry
NONO_c26310 CDS
T03032
Symbol
ligA1
Name
(GenBank) DNA ligase 1
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
nno
Nocardia nova
Pathway
nno03030
DNA replication
nno03410
Base excision repair
nno03420
Nucleotide excision repair
nno03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
nno00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NONO_c26310 (ligA1)
03410 Base excision repair
NONO_c26310 (ligA1)
03420 Nucleotide excision repair
NONO_c26310 (ligA1)
03430 Mismatch repair
NONO_c26310 (ligA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nno03032
]
NONO_c26310 (ligA1)
03400 DNA repair and recombination proteins [BR:
nno03400
]
NONO_c26310 (ligA1)
Enzymes [BR:
nno01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NONO_c26310 (ligA1)
DNA replication proteins [BR:
nno03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NONO_c26310 (ligA1)
DNA repair and recombination proteins [BR:
nno03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NONO_c26310 (ligA1)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NONO_c26310 (ligA1)
MMR (mismatch excision repair)
DNA ligase
NONO_c26310 (ligA1)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NONO_c26310 (ligA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_5
HHH_2
DNA_ligase_ZBD
BRCT
IclR
HHH
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AHH17423
UniProt:
W5TEM7
LinkDB
All DBs
Position
complement(2867376..2869397)
Genome browser
AA seq
673 aa
AA seq
DB search
MSVGLGSVWDVDTGERIRQLADRMVVLRDAYYRGSPLVADAEFDAIEDELRALVEAHPEL
TPDPNPLEQVGAPAVLHAPIRHSRPMLSLEKATRPEQVVAFFDRFPGQPVVVMPKLDGLS
LAVVYSDGQLVRAVTRGDGTTGDDVTMLVRALVDGVPDRIEVPGRVEIRGEAVMLRSTFA
AYNTAHPDKPLINPRNAAAGTLRAKDPATVAERRLRFFGFDLDAESGGAAIDLEEGLRSL
GVAGAQMRLCPDAERAQAAIGAIEQGRNDLDYDIDGAVLRLADRGAYAAAGTRSSSPRGA
LAFKFAAEEKTTLLADVVWDVGKTGKIVPVAWLEPVFVGGTTVTKATLANQEVIRARDIK
IGDTVLVRRAGDVIPFVAGVLDAAARTGAEREIVPPTACPSCGQAVTEQGNSRELFCTNV
SCPAQTVRRLIHWASRAAADIEAIGPVWIERLAEAGILEHPSDFYTLTKERLLEFDRVGE
VSAARMIDSIDGSRRVGLRRALIGMAVPMASDGTAARLARAGFGSLEEVADAGEERLVAV
EDIGPKVAASLIEHLTRLRPELERLRANGVSLDVREEDLPPVVAAGAPLAGKTVVITGAI
SDPRSGEKVARPTFQRLCEKAGATAASSVSANTDLLITGAGVGDSKLAKAEKLGVEVADQ
GEIWKLLIEAKVV
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
ttgtcggtcgggctcggtagcgtctgggacgtggacactggggaacgcattcggcagctc
gccgatcggatggtggtactgcgcgacgcctactatcggggctcgccgctggtcgccgac
gccgagttcgacgcgatcgaggacgagctgcgggcgctggtcgaggcgcatccggaactg
acgccggatccgaatccgctcgagcaggtcggcgcgcccgcggtgctgcacgccccgatc
cggcattcacgcccgatgctgtcgctcgagaaggccaccagacccgagcaggtcgtggcg
ttcttcgaccgttttcccggccagccggtcgtggtgatgccgaagctcgacggattgtca
ctggccgtggtctactccgacgggcagctggtgcgggcggtgacgcgcggtgacggcacc
accggtgacgatgtgacgatgctggtgcgcgccctggtcgacggcgtacccgatcgcatc
gaggtgccggggcgggtggagatccgcggcgaggcggtgatgctgcgctcgaccttcgcc
gcctacaacaccgcgcatccggacaaaccgctgatcaatccgcgcaacgctgccgcgggc
acactgcgggcgaaggatccggccacggtcgccgagcggcggctgcggttcttcggattc
gatctggacgccgaatccggtggcgccgcaatcgatttggaagagggactgcggtccctg
ggggtggcgggcgcgcagatgcggctgtgcccggacgccgagcgcgcccaggcggcgatc
ggcgcgatcgaacagggccgcaacgacctcgactacgacatcgacggtgcggtactgcgc
ctggccgaccggggcgcgtacgcggcggccgggacgcggtcgagctcaccgcgcggcgcg
ctggcgttcaaattcgccgcggaggagaagacgacgctgctcgccgatgtggtgtgggat
gtcggcaagaccggcaagatcgtcccggtcgcctggctggaaccggtcttcgtcggcggc
accacggtcacgaaggcgacgctggccaatcaggaggtgatccgcgcccgcgacatcaag
atcggggacacggtgctggtgcgccgcgcgggcgatgtgatcccgttcgtggcgggcgtg
ctcgacgccgccgcgcgcacgggcgccgaacgcgagatcgtgccgcccaccgcgtgcccg
tcgtgcgggcaggcggtgaccgaacagggcaacagccgggaactgttctgcaccaacgtc
tcctgccccgcgcagacggtgcgcaggctcatccactgggcgtcgcgggccgcagccgat
atcgaggccatcgggccggtgtggatcgaacgcctcgccgaggcgggcattctcgaacac
ccgtcggacttctacacgctcaccaaggagcgtctgctcgaattcgaccgtgtcggtgag
gtttcggccgcccgcatgatcgattcgatcgacggcagccgccgggttggcctgcgccgc
gcgctcatcggcatggccgttccgatggcctccgacggcacggcggcccgcctggcccgc
gccggattcggttccctcgaggaggtcgccgacgcgggcgaggaacgcctggtggcggtg
gaggacatcggccccaaggtcgccgcctcgctgatcgagcatctcacccgcctgcgcccg
gagctggaacgccttcgcgcgaacggtgtttcgctggatgtgcgggaagaggatctgccg
ccggtcgtcgcggccggtgcgccgctggccgggaagacggtggtgatcaccggcgccatc
agcgacccgcgctccggggagaaggtcgcgcgcccgaccttccaacgcctgtgcgagaag
gccggggcgaccgcggcctcctcggtctcggccaataccgacctgctcatcaccggcgcc
ggagtcggcgacagcaaactggccaaggcggagaaactcggcgtcgaggtcgccgatcag
ggcgagatctggaagctgctgatcgaggccaaggtcgtctga
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