Nitrosococcus oceani: Noc_2897
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Entry
Noc_2897 CDS
T00281
Name
(GenBank) RNAse R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
noc
Nitrosococcus oceani
Pathway
noc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
noc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Noc_2897
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
noc03019
]
Noc_2897
03016 Transfer RNA biogenesis [BR:
noc03016
]
Noc_2897
Enzymes [BR:
noc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Noc_2897
Messenger RNA biogenesis [BR:
noc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Noc_2897
Transfer RNA biogenesis [BR:
noc03016
]
Prokaryotic type
tRNA degradation factors
Noc_2897
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_12
OB_Dis3
LexA_DNA_bind
Motif
Other DBs
NCBI-ProteinID:
ABA59343
UniProt:
Q3J753
LinkDB
All DBs
Position
complement(3275464..3277632)
Genome browser
AA seq
722 aa
AA seq
DB search
MSDWKKKDPYFARETQKYGQPIPSREYIMQCLERRGRPMTRKELIKTLKLDSGEEVREAF
RRRLRAMERDGQLMRNRRRAYGLVHKMDLVRGRIIGHKDGFGFLVPDEGGEDLYLSARQM
RAVLHGDRAVAQVTGIDRRGRREGAVIEVLERNNHRVVGRFVAEDTLGFLVPSNQRLSQD
ILIPLEHQEGAQDNQIVVAEITEQPTAKRQPIGRIVELLGDHMAPGMEMDIALQIHELPH
VWPEEVLTEAKVFKTTVPRKAKAGRLDLRDLPLVTIDGEDAQDFDDAVYAERHDQGWRLW
VAIADVSWYVQPYSALDSEAEKRGNSVYFPSRVIPMLPEALSNGLCSLNPKVDRLCLVCE
MVIGPRGGLNSFRFHSGVMRSAARLTYHQAAALLEGSDRKLQERYKTVLPGLEAMHSLYQ
VLHKARARRGAIDFEMGETQIIFDEAQKIKDIQPLVRNDAHRLIEEFMILANVAAARFLT
QHKVPTLYRVHERPADDKLVDLHKFLAELGLALQGGESPGAKDFARFLRSVQERPDAHLI
QTVILRTFKQAVYSPDNHGHFGLSLPVYTHFTSPIRRYPDLLVHRAIRHVLEQRSAKTFL
YTQDEMMALGEHCSMTERRADEATRDAEDWLKCEYMKDRVGESFDGLITGVTSFGLFVEL
SDIYVEGLVHVTALGNDYFHFDPAGRRLLGEHTRQVYRLADKVRVMVVRVDLDEKKIDLE
LA
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atgagcgattggaaaaaaaaggacccctactttgcccgtgaaacccagaaatacgggcaa
cctatccccagccgggaatatatcatgcaatgtttagaacggcggggtagacccatgact
cgcaaggagctgataaaaaccttaaagcttgatagcggcgaggaggtgcgggaggctttc
cgccgccgcctgcgggccatggagcgggatggccaactcatgcgcaaccgccgccgcgcc
tatggcttggtccacaaaatggatctggtgcgggggcggatcatcggtcacaaggatggt
ttcggttttctggtgcccgatgaggggggagaggatctttatctttccgcgcgacaaatg
cgtgctgtcctgcacggggatagggcagtcgcccaggttaccgggattgaccgacgcggg
cgccgcgaaggggccgtgattgaagtgttagagcggaataaccaccgggttgtgggccgc
tttgtcgccgaggatacattgggtttcttggtgcccagcaaccagcgcctcagccaggat
attctaattccgctggagcatcaggaaggtgcccaggacaatcaaattgtcgttgccgag
atcacggagcagcctaccgccaagcgccagcccattggcagaatcgtggagttgctcggc
gatcacatggcgccagggatggagatggatattgcgcttcaaatccatgaactaccccat
gtttggccggaagaagtgctgaccgaggctaaggttttcaaaaccacggtgcctagaaaa
gcaaaagcgggacggctggatttgcgggatctgcctctggtgaccattgatggggaagat
gcccaggattttgatgatgcggtttatgcggagcgccacgaccagggttggcgcttgtgg
gtggcgattgcggatgtctcctggtatgtacagccttattccgccctggatagcgaggcc
gaaaaacggggcaactcggtgtatttccccagccgggtaattcccatgctgccggaagcg
ctgtctaatggcttgtgttccctcaatccgaaggtggatcggctgtgtttggtctgtgaa
atggtgatcggcccgcgggggggattaaatagctttcgttttcattccggggtaatgcgg
tcagcagcccggttgacttaccatcaggccgcggccctccttgagggtagtgatcgcaag
ctgcaagagcgttataagacggtgcttccagggcttgaggcaatgcatagcctttatcag
gtgttacataaagcccgcgcccggcggggcgctattgattttgaaatgggcgagacccaa
atcattttcgatgaggctcaaaagattaaggacattcagcccttggtgcgtaatgacgcc
catcgtctgattgaagagttcatgatcctggccaatgtggctgcggcccggttcctgact
caacataaagtgcccaccctttatcgcgttcacgagcgaccagcggacgataaattggtt
gatttacacaagttcctggccgaattaggattggctttgcaggggggtgagtctcctgga
gccaaggattttgcccgctttttacgctctgttcaggagcgcccggatgcccacctcatc
cagacagtgatattgcgcacctttaagcaggcggtttacagtcccgacaaccatgggcat
ttcgggctatctctgcccgtctatactcactttacttctcccatacggcgttaccctgat
ttgctggtgcatcgtgctattcgccatgtgctagaacagcgatccgcaaaaacgttcctg
tacacccaggatgaaatgatggccctgggggagcattgctccatgaccgagcgccgcgcc
gatgaggccacccgtgatgccgaagactggctcaaatgcgaatatatgaaggatagggta
ggcgagtcctttgacggcctaatcaccggggtcacctcttttggcctcttcgtggaactc
agcgatatttatgtggaagggttggtccacgttacggctctgggcaacgattatttccat
tttgaccctgcgggtcgccgtcttctgggggagcacacgcgccaggtttaccgtttggcc
gataaagtccgggtcatggtcgtccgggtcgatctggatgagaagaaaatcgatctggaa
ttggcttga
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