Nostoc sp. CENA543: CLI64_25210
Help
Entry
CLI64_25210 CDS
T05285
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
noe
Nostoc sp. CENA543
Pathway
noe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
noe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CLI64_25210 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
noe03400
]
CLI64_25210 (mfd)
Enzymes [BR:
noe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CLI64_25210 (mfd)
DNA repair and recombination proteins [BR:
noe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CLI64_25210 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
CarD_TRCF_RID
ResIII
UB2H
PsbQ
AAA_16
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AUT03444
UniProt:
A0A2I8ADL5
LinkDB
All DBs
Position
6049020..6052571
Genome browser
AA seq
1183 aa
AA seq
DB search
MAFSSIVRALGRSPLTTELLSKLNRQQELRLNGIPRLPKGLVASALAQNSQRNLFVVCAT
LEEAGRAYAQLEAMGWQTVHFYPTSEASPYEPFDPETEMTWGQMQVLADLVKSQQSIVNS
QESIVNSQQSIVNSREFNKIAVVATVGALQPHLPPPGAFTPLCLTLKKGMEFDLDAFSEK
ITLLGYERVPLVETEGQWSRRGDIVDVFPVSSELPVRLEWFGDEIEQIREFDPSTQRSAL
DKVTQITLTPTSFTPIILDALKGNAKFQAMSSDFSSDSELDSESGIIEGSRRFLGLAYEK
PASILDYLPEDTLIAIDEPEQCHAHSDRWVENAEEQWSLGTGEYDLGSLQLPKIHRCFDD
CLADVTRFKTIYLSELAEENNGMNLASRRVPVTPHQFAKLADTLRQERDRNFSIWLISAQ
PSRSVSLLQEHDCPAQFIPNPRDYQAIDKLQINHIPVALKYSGLAELEGFILPTFRLVVV
TDREFYGQHSLATPSYIRKRRKAASKQVDPNKLRPGDYVVHKSHGVGKFVKLESLTINDE
TRDYIVVQYADGLLRVAADQVGSLSRFRSTGDKAPELHKMTGKAWENTKNRVRKAIKKLA
VDLLKLYAARSQQQGFAYPQDMPWQEEMEDSFPYQATTDQLKAVQDVKRDMESDRPMDRL
VCGDVGFGKTEVAIRAIFKAVTSGKQVALLAPTTILTQQHYHTLKERFAPYPVNVGLLNR
FRTAEERRDIQKRLATGELDVVVGTHQLLGKGVNFKDLGLLVIDEEQRFGVNQKEKIKTL
KTQIDVLTLSATPIPRTLYMSLSGIREMSLITTPPPTRRPIQTHLSPMNPETIRSAIRQE
LDRGGQVFYVVPRVEGIEETTGKLREMIPGGRFAIAHGQMDESELESTMLTFSNGEADIL
VCTTIIESGLDIPRVNTILIEDAHKFGLSQLYQLRGRVGRAGIQAHAWLFYPKQRALSDA
ARQRLRAIQEFTQLGSGYQLAMRDMEIRGVGNLLGAEQSGQMEAIGFDLYMEMLEESIRE
IRGQEIPKVDDTQIDLNLTAFIPADYIPDIDQKMSAYRAVAAAKSKDELTQIAAEWGDRY
GNLPVPANQLLRVMELKQLAKQLGFSRIKPENKQHVVLETPMEEPAWNLLAANLPDHLKT
RFVYSPGKVTVRGLAVLKADQQLQSLIDAMTKMQGAIVEAAVV
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atggcattttcttctattgtgcgtgccttggggcgatcgccactcaccactgagttactt
tctaaattaaatcgtcaacaagagttacgccttaatggtatacctcgtctacctaaaggc
ctagtagcttcggcgttagctcaaaattctcaaaggaatttattcgtagtttgcgccaca
ttagaagaagctggacgcgcttacgcacagttagaggcgatgggttggcaaactgtgcat
ttttacccgacttctgaggcttccccttacgaaccttttgaccccgaaacggaaatgacc
tggggacaaatgcaggttttggcagatttggtaaagagtcaacagtcaatagtcaacagt
caagagtcaatagtcaacagtcaacagtcaatagtcaacagtcgagagtttaataaaatc
gcggttgtggctactgtcggggctttgcagccgcatttaccaccaccaggtgcttttact
cctttgtgtcttaccctgaaaaaagggatggaatttgacctggatgcttttagtgaaaaa
atcactcttttgggatatgaacgtgtacctttagtagaaacagaaggacaatggagtcgg
cgcggtgatattgtcgatgtttttcctgtgtcttctgagttaccagtgcgcttggagtgg
tttggcgatgaaattgagcaaattcgggaatttgacccatcaactcaacgttcagccctt
gacaaagttacacaaattacccttacccctactagctttaccccaattatcttagatgca
ctcaaaggtaatgctaagtttcaggcgatgagttctgattttagttctgattcagaattg
gatagtgagtcaggaattatcgaaggtagtcgcagatttttgggtttagcctatgaaaaa
cccgcttcgatactggattacttaccagaggataccttgattgccatcgatgagccagaa
caatgtcatgctcatagcgatcgctgggtggaaaatgctgaggaacaatggtctttagga
actggggaatatgatttgggttcgctacaattacccaagattcatcggtgttttgatgac
tgtttggctgatgtcaccagatttaagactatttatttatcggaactagcagaagaaaat
aacgggatgaatttggctagtcgccgtgtacctgtgacaccgcaccaatttgccaaacta
gcagatacattacgccaagaacgcgatcgcaatttctcgatttggttaatttcggctcaa
ccttcccgttctgtttctctcctgcaagaacatgattgtccggcgcagtttattcctaac
ccccgtgactaccaagctatcgacaagctacaaatcaaccatatccccgtagctttgaaa
tattcaggactggcggaattagaaggttttattttaccgactttccgcttagtagtcgtc
accgaccgcgaattttacggacagcattccctcgccacccccagctacatccgcaagcgg
cgcaaagctgcatctaagcaagttgaccccaataagctgcgtccaggggattatgtagtt
cacaaaagtcatggggtgggtaaattcgtcaagttagaaagtctgacaattaatgacgaa
acccgtgattacattgtcgtacagtatgctgacggtcttttaagagtcgctgctgaccaa
gtcgggtcattgtctcgcttccgcagtacaggcgataaagccccagaactgcataaaatg
accggtaaagcttgggaaaataccaagaaccgcgtccgcaaagctattaagaaattagca
gtagacttgctgaaattatacgccgcgcgatcgcaacaacaagggtttgcctatccccaa
gatatgccttggcaagaggaaatggaagattccttcccctaccaagccacaaccgaccag
ctaaaagctgtgcaggatgtgaaacgcgatatggaaagcgatcgcccaatggatcggtta
gtatgtggtgatgtgggtttcgggaaaacagaggtagctatccgtgctattttcaaagcc
gtcacttccggtaaacaagttgctttacttgcaccaaccacaattctcacccagcaacac
taccacaccctcaaagaacgtttcgccccctaccccgtcaacgtcggcttacttaaccgt
ttccgtaccgccgaagaacgccgtgatatccaaaagcgtctagccacaggggaattagat
gtagtagttggcacacaccaacttttaggcaaaggtgtcaacttcaaagacttaggacta
ttagtaattgacgaagaacaaagatttggggtgaaccaaaaagagaaaattaaaaccctg
aaaacccaaatagacgttctcacactctccgccacacccattccccgcaccttatatatg
tccttgtcgggaattcgggaaatgagtttgattaccaccccacctccaacccgcagacca
attcaaactcacctttcaccgatgaatcccgaaaccatacgtagtgctattcggcaagaa
ttagacagaggtggtcaggtattttatgtagttccacgggtagagggtattgaagagaca
acaggtaaactgcgagaaatgatccctgggggaagatttgcgatcgctcacggtcaaatg
gacgagagcgagttagaatcaaccatgctcacctttagtaacggtgaagcagatatcctc
gtctgtaccaccattattgaatcaggcttagatattccccgcgtcaacaccatcttaatt
gaagacgcgcacaagtttggtttatcgcaactataccaattacgcggacgagtaggacgt
gcaggtattcaagctcatgcttggctattttatcccaaacaacgggcgttatctgatgcc
gcacggcaacgtttacgggcgattcaggaatttacgcaacttggttctggctatcagtta
gcaatgcgcgacatggaaatcagaggcgtgggtaacttgctcggtgcagaacaatccggt
caaatggaagcgattggttttgatttatacatggaaatgttagaagaatcaatccgagaa
attcgcggtcaagaaatacccaaagttgacgacacacaaattgacctcaacctcaccgcc
tttatccctgctgattatattcccgatattgatcaaaagatgagtgcgtatcgtgcggta
gcagcagcaaaatccaaagacgagttaacgcagattgcagcagagtggggcgatcgctat
ggtaatttaccagttcccgcaaatcaactattgcgagttatggaactcaaacaactagcg
aaacaactaggatttagccgcatcaaaccagaaaacaaacagcacgttgttttagaaacc
ccaatggaagaaccagcatggaatttattagccgcgaacttaccagaccatctcaagacg
cgtttcgtttactctcctggtaaggtgacagtacgcggtttagcagtgttaaaagccgac
caacaattgcagagtttaatcgatgcgatgaccaaaatgcagggtgcgatcgtagaagca
gccgttgtttaa
DBGET
integrated database retrieval system
