Novosphingobium sp. Gsoil 351: GKE62_01385
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Entry
GKE62_01385 CDS
T06443
Name
(GenBank) UdgX family uracil-DNA binding protein
KO
K21929
uracil-DNA glycosylase [EC:
3.2.2.27
]
Organism
nog
Novosphingobium sp. Gsoil 351
Pathway
nog03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
nog00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
GKE62_01385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nog03400
]
GKE62_01385
Enzymes [BR:
nog01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.27 uracil-DNA glycosylase
GKE62_01385
DNA repair and recombination proteins [BR:
nog03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
GKE62_01385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF4130
UDG
Motif
Other DBs
NCBI-ProteinID:
QGN56231
UniProt:
A0A6I5X263
LinkDB
All DBs
Position
complement(285138..286574)
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AA seq
478 aa
AA seq
DB search
MHAPDALGVTLTASDDFAEWRDHARCLIQADVPPDRIAWSEPGGTSGSLFARSDRQVPGP
LADAPQPRAARAFVQLAQSAILHSDPERFALLYRLLWRLQRKPKLMEDAADRDVRRIDEL
ARTVRRDIHKMRAFVRFRVVDEPDGGEHYVAWFEPEHHILRANARFFVNRFTNMAWSILT
PAGSLHWNGQILSEGPPAQRGDAPASDAAEDLWRTYYASIFNPARLKVGAMLKEMPRKYW
KNMPEAALIPQLIAGAQAREATMVDAGSDLFLGEERPTSLAAIGEAIRVCRRCEIGCNGT
DAVMGEGPREAALMIVGEQPGDVEEQQGRPFVGPAGRLLRAHLEDAGIDDKTAYVTNVVK
HFKFVSKVMRGGGKRRLHQSPTAKEIDICRWWVDAERAIVKPRLVLALGASAARGMLGKT
VSVQKERSRPHKLEDGTELWITTHPSYLLRLQDDARASEEQRFAEDLRAVAARLAEFA
NT seq
1437 nt
NT seq
+upstream
nt +downstream
nt
atgcacgcacccgacgcgcttggggttacgctgaccgcatccgacgacttcgccgagtgg
cgcgatcatgcgcgatgcctgatccaggccgatgtcccgcccgatcgcatcgcctggagc
gagccgggcgggacctcgggcagcctgttcgcgcgctccgaccggcaagtgcctggccca
ctcgccgatgcgccccaaccccgtgccgcgcgtgcgtttgttcaacttgcccaaagcgcg
atcctgcattccgaccccgagcggttcgcgctgctctatcgcctgctgtggcggctccag
cgcaagccgaagctgatggaagacgccgccgaccgcgacgtgcgccggatcgacgaactc
gcccgcaccgtgcgccgcgacattcacaagatgcgcgcgttcgtgcgcttccgggtggtc
gatgagcccgatgggggcgagcactacgtcgcctggttcgaacccgagcatcacatcctg
cgcgccaatgcgcggttcttcgtcaaccgtttcaccaacatggcgtggtcgatcctgacc
ccggcgggctcgctccactggaatgggcaaatcctgtccgaaggcccgcccgcccagcgc
ggcgacgcccctgcgagcgacgcggcggaggatctatggcgcacctattatgcgtcgatc
ttcaatcccgcgcgtttgaaggtgggggcgatgctcaaggagatgccccgcaagtactgg
aagaacatgcccgaggcggcgctgatcccacagttgatcgccggggcgcaggcgcgcgag
gcgacgatggtggatgcgggaagcgatctgttcttgggcgaggaacggccgacgagcctg
gcggcgatcggcgaggcgatccgggtctgtcgccgctgcgagatcggctgcaacggcacc
gatgcggtgatgggcgaggggccgcgcgaggctgcgctgatgatcgtcggcgaacagccc
ggcgatgtcgaggaacagcaggggcggccgttcgtcggccccgccgggcggcttctgcgc
gcgcatctggaggacgccgggatcgacgacaagaccgcttacgtgaccaacgtggtcaag
cacttcaagttcgtgtccaaagtcatgagagggggcggcaagcgccgccttcaccagtcg
cccaccgccaaggagatcgacatctgccgctggtgggtcgatgccgagcgcgcaatcgtc
aaaccgcggctggtcctcgcgctcggcgccagcgcggcgcgggggatgctgggcaagacc
gtcagcgttcagaaggaacgcagccgcccgcacaagctggaggacggcaccgagctgtgg
atcaccacccacccctcatacctgctccgcctgcaggacgatgcccgcgccagcgaggaa
caacgctttgccgaagatttacgtgcggttgcggcgcgcctggcggaattcgcctag
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