KEGG   Novosphingobium sp. Gsoil 351: GKE62_16650
Entry
GKE62_16650       CDS       T06443                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
nog  Novosphingobium sp. Gsoil 351
Pathway
nog03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:nog00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    GKE62_16650 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:nog03400]
    GKE62_16650 (ligD)
Enzymes [BR:nog01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     GKE62_16650 (ligD)
DNA repair and recombination proteins [BR:nog03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     GKE62_16650 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C RNA_ligase DNA_primase_S
Other DBs
NCBI-ProteinID: QGN55940
UniProt: A0A6I5WX30
LinkDB
Position
complement(3461261..3463819)
AA seq 852 aa
MARSDPLAAYNAKRDFKLTAEPAGKREASATGKAGSTSGPGLFIVQKHDATRLHWDFRIE
VDGVLKSWAVTRGPSLDPEDKRLAVRTEDHPMAYAEFEGTIPKGEYGGGTVMLWDRGTWA
PIAGKSAKDIDKGHLHFTLAGERMNGEWIMIRLRPRPGEKRENWLLRKIADEFAEVGDVL
VERSLTSVLTKRTMAEIAADQAGEHSLKGQKGKAFTAIMADAAQHNATVAKPAAKPRKAK
PRKATAAKLPAFRPPQLATLVDAVPAGNSWFHEIKFDGYRALVAVKGGEVRVHTRNGLDW
TDKFAPLAKAIAALDLPPALIDGEIVSYDTDGNPDFSSLQAVLKRGHGAQTDATPLAFHA
FDLLELDGADLTTLTNIERKERLEALLAAAAPPIHVADHVIGAGEKLLRTMCDAGQEGII
SKRIDGKYAGKRSRDWLKVKCTRRQEFVIVGWKKSSAKGRPFSSLVLAQHEGKTLVYKGN
VGTGFTGDTLGDLAARMDKLEAADAPLNVPRAARRGVTWLKPELVAEIAFAEFTADGSVR
HGSFLGLRGDKPARDVSPETPVTVPTAETVKISNRDRPVFDSGQTKGDLADYYATIAPLM
LPFAAGRPVSLVRCPQGRGKKCFFQKHDAGTFGAHVHHVPIVEKDGGAEDYLWLDSAEGL
LSCVQMGTIEFHGWGSRASDVEHPDRLIIDLDPDEGLDFGDVKSAAKDIHDKLEDLGLVS
FAMLSGGKGVHVVVPLDAGHSWEVHKDFAKRFAEALSLAEPERFVATMSKAKRKGKIFID
WLRNQRGSTAVLPYSARAREGAPVAAPIAWGELAGFDNAHPWSIGDVNALLRRAKGKALA
GWGFAAQKLPDF
NT seq 2559 nt   +upstreamnt  +downstreamnt
gtggctcgctccgatcccctcgctgcctacaatgccaagcgcgatttcaaactgacggcg
gaacccgcgggcaagcgagaggccagcgccaccggcaaggccggatccacgtccggccca
ggccttttcatcgtccaaaagcacgacgcgacccggctccattgggatttccgcatcgag
gtcgatggcgtgctcaaatcgtgggcggtgacgcgcggccccagcctcgatccggaggac
aagcggctcgcggtgcggaccgaagaccacccgatggcctatgccgaattcgagggcacg
attcccaagggcgaatatggcggcggcacggtgatgctgtgggaccgcggcacatgggcg
ccgatcgcggggaaaagcgccaaggacatcgacaaggggcacctccacttcaccctggcg
ggcgagcggatgaacggcgagtggatcatgatccgcctgcggccgcgcccgggcgagaag
cgcgagaactggctgctgcgcaagatcgccgacgagttcgcggaagtgggtgacgtgctg
gtcgaacgatcgctgaccagcgtgctgacgaagcgcacgatggcagaaatcgccgccgat
caggcgggcgagcattcgctcaagggtcagaaaggcaaggcgttcaccgcaatcatggcc
gatgcggcgcaacacaacgcgacggtcgccaagcccgcggccaagccgcgcaaggccaag
ccacgcaaggccacagcggcaaagctccccgccttccgcccgccccagctcgcgaccctc
gtcgatgccgtacctgcgggcaattcgtggttccacgagatcaagttcgacggctaccgc
gcgctggtcgcggtcaagggcggagaggtgcgcgtccacacccgcaacgggctcgactgg
accgacaagttcgctccgctcgccaaagccatcgccgcgctcgacctgccgcccgcgctg
atcgatggcgagatcgtgtcgtacgacacggacggcaaccccgacttctcctcgctccag
gccgtcctcaagcgcggccacggtgcgcagaccgacgccacccccctcgccttccacgcc
ttcgacctgctcgagctcgacggcgcggacctgaccacgctgaccaacatcgagcgcaag
gagcgccttgaagccctgctcgccgccgccgcgccgccgatccacgtcgccgaccacgtg
atcggcgcgggggagaaactgctgcggacgatgtgcgacgccggacaggaagggatcatc
tccaagcggatcgacggcaaatatgcgggcaagcgcagccgcgactggctcaaggtcaaa
tgcacccggcgccaggaattcgtgattgtcggctggaagaaatcgagcgccaagggccgc
ccgttctcgtcactggtgctcgcgcaacatgaaggcaagacgctggtctacaagggcaat
gtcggcaccggcttcaccggcgatacgctgggcgatctggccgcacggatggacaagctg
gaagccgccgacgcccctctgaacgtcccgcgcgccgcgcggcgcggggtcacctggctc
aagccggagctcgtcgccgagatcgcctttgccgaatttacagccgacggctcggtccgc
cacggcagcttcctggggttgcgcggcgacaaacccgccagggacgtgtcgcccgaaacg
ccggtcaccgtgccgacagcggaaaccgtcaagatctcaaaccgcgaccgtcccgtgttc
gacagcggccagaccaagggcgatctcgccgactactacgcgacgatcgccccgctgatg
ctgccgttcgccgccggccgcccggtcagcctcgtccgctgcccgcagggtcgcggcaag
aagtgcttcttccagaagcatgacgccgggacattcggcgcgcacgtccaccatgtgccg
atcgtcgagaaggacggcggggcagaggattacctgtggctcgacagcgccgaggggctg
ctgtcgtgcgtccagatggggacgatcgaattccacggctggggcagccgcgccagcgat
gtcgagcaccccgaccgcctcatcatcgatctcgatcccgacgagggcctcgatttcggc
gacgtcaaaagcgcggccaaggacatccacgacaagctcgaggacctgggcctggtcagc
ttcgcgatgctttcggggggcaagggcgtccacgtggtggttccgctcgacgccgggcat
tcgtgggaggtgcacaaggacttcgccaagcgtttcgccgaggcgctcagtctggccgag
cccgagcggttcgtcgcgacgatgagcaaggccaaacgcaagggcaagatcttcatcgac
tggctgcgcaaccagcgcggcagcaccgccgtgctgccctattcggcccgcgcccgcgaa
ggcgcgccggtggcggcgccgatcgcctggggcgagttggccggattcgacaacgcgcac
ccgtggtcgatcggggatgtcaacgcattgctccgaagagcgaaaggcaaggcgttggcg
ggatggggttttgctgcgcagaagctacccgatttctga

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