Novosphingobium sp. THN1: C7W88_14340
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Entry
C7W88_14340 CDS
T05635
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
not
Novosphingobium sp. THN1
Pathway
not03410
Base excision repair
not03430
Mismatch repair
not03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
not00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
C7W88_14340 (recJ)
03430 Mismatch repair
C7W88_14340 (recJ)
03440 Homologous recombination
C7W88_14340 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
not03400
]
C7W88_14340 (recJ)
DNA repair and recombination proteins [BR:
not03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
C7W88_14340 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
C7W88_14340 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
C7W88_14340 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
DUF2529
Glyco_trans_1_2
Motif
Other DBs
NCBI-ProteinID:
AXU19942
UniProt:
A0A3B7E144
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All DBs
Position
2889152..2890933
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AA seq
593 aa
AA seq
DB search
MIPVTAITRSLSGQAWRWRGGNMDFGQSGSGRDGDEAIVTQLLLSRGVSPDDLERHRRPT
LRDFLPDPSLFRDMDEAARRLADAILRNEKITIYGDYDVDGATSAALLILLLRDLGVSAG
HYIPDRLLEGYGPSGEALVRLAQQGSQLIVTVDCGAMAHEALDAAAQAGVDVIVVDHHKC
SPELPRAAALVNPNRLDECDEAAAHGHLAAVGVAFLLAVALVRELRGRGYFESRKAPDLM
GLLDLVALGTVADVAQLKGLNRALVSQGLKIMARRENIGLSALIDASRLSRAPTCSDLGF
ALGPRINAGGRVGEATLGVRLLTTQDPDEAREIAAQLSRLNDERRAIEQEVQEAAEAQIA
AQHNRAVMVLAGRGWHPGVIGIVAGRIKEKTGKPSLVIALDADEAGLGKGSGRSIAGVDL
GAAVIAAREAGLLVAGGGHAMACGLTIDPARLNALADWLDARLARDVTGARGAQSLLLDL
SLAPGGLRPSLVETLDAAGPFGIGWPGPRVAVGPVRLVKCDLVGTDHVRMVAAGADGHSF
KAIAFRAAQSEMGQALLHGSRGRQFWLAGRAKIDDWGSRPAAELHVEDAAFAD
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atgattccagtcactgcgattacacgatccctttcgggccaggcctggcgctggcgcggc
ggcaacatggatttcgggcagagcggcagtggccgagacggcgacgaagccattgtcacg
caactgctgctttcgcgtggtgtctcccccgacgatctcgaacgtcatcgccgccctacc
ctgcgtgatttcctgcccgacccttcgctgtttcgggacatggacgaagctgcgcggcgc
ttggccgacgccatcctgcgcaacgagaagatcacgatctacggggactacgacgtggac
ggcgcaacaagcgcagcactgctgatcctgctcctgcgcgatcttggtgttagcgccggc
cactatatcccggaccggctgctcgaaggctatggcccctcaggcgaagcgctcgtccgc
ctcgcccagcagggcagccagctgatcgttaccgtcgattgcggggcaatggcgcatgaa
gcgcttgatgcggcagcgcaggccggggtcgacgtcatcgttgtcgaccaccacaaatgc
tcgcctgagctgccgcgcgctgctgcgctggtgaatccgaatcgcctcgacgaatgcgac
gaggctgccgcgcatggccatctcgctgccgtaggcgtggcctttctcctggccgtggcc
ctggtccgcgaactgcgcggacgcggatacttcgaaagccgcaaggcgcccgacctcatg
ggcctgctcgaccttgtggcactcggcaccgtggcagacgtggctcaactcaagggccta
aaccgcgcgctggtatcgcaaggtctcaagatcatggctcgccgggagaacatcggcctt
tccgcactgatcgacgccagccgcctgtcgcgcgcgccgacatgcagcgacctcggcttt
gccttaggcccgcgaatcaacgcaggcggccgcgtgggtgaagccacgcttggcgtgcgc
ctgctgaccacccaggaccccgatgaggctcgggagattgcggcgcagctgtcccgcctc
aacgatgaacggcgcgcgatcgaacaggaagtgcaggaagcggccgaggcacagatcgct
gcgcagcataaccgtgccgtcatggttctggccgggcgcggctggcatccgggcgtaatc
ggcatcgtggcggggcgaatcaaggaaaagaccggcaagccttcgctggtaatcgctctt
gatgcagacgaggcaggcttgggcaaaggctcgggccgatctatcgccggggtcgacctg
ggcgctgcagtgatagctgcgcgcgaggccgggctgctcgtcgcaggcggcggccatgcc
atggcttgcgggctgacgatcgatccggcgcggctcaatgcgctggcggactggctggac
gcgcgactcgcgcgcgacgtgacgggtgcgcgaggcgcgcaatcgttgctgctggacctg
tcgctggcgcccggcggcttgcgtccctcgctggtcgaaacgctcgacgctgctggcccc
ttcggaataggctggcccggcccgcgtgtcgccgttggtcccgtaaggctcgtgaaatgc
gatctggtcggcaccgatcatgtgcgcatggtggcggcaggcgcggatggccactcgttc
aaggcgatcgcatttcgcgccgcgcagagcgaaatgggccaggcattgctgcacggttcg
cggggccgacagttctggctggccgggcgtgccaagatcgacgactggggcagccgcccc
gctgcagaactccatgtggaggacgccgcattcgccgactga
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