KEGG   Natronococcus occultus: Natoc_3584
Entry
Natoc_3584        CDS       T02426                                 
Name
(GenBank) ATP-dependent DNA ligase I
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
nou  Natronococcus occultus
Pathway
nou03030  DNA replication
nou03410  Base excision repair
nou03420  Nucleotide excision repair
nou03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:nou00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Natoc_3584
   03410 Base excision repair
    Natoc_3584
   03420 Nucleotide excision repair
    Natoc_3584
   03430 Mismatch repair
    Natoc_3584
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:nou03032]
    Natoc_3584
   03400 DNA repair and recombination proteins [BR:nou03400]
    Natoc_3584
Enzymes [BR:nou01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     Natoc_3584
    6.5.1.6  DNA ligase (ATP or NAD+)
     Natoc_3584
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     Natoc_3584
DNA replication proteins [BR:nou03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    Natoc_3584
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     Natoc_3584
DNA repair and recombination proteins [BR:nou03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     Natoc_3584
   NER (nucleotide excision repair)
    Other NER factors
     Natoc_3584
   MMR (mismatch excision repair)
    Other MMR factors
     Natoc_3584
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Other DBs
NCBI-ProteinID: AGB39302
UniProt: L0K1Z2
LinkDB
Position
3520082..3521875
AA seq 597 aa
MEFATFADRAAAIEAEPADLEIVAHVATLLEDAADGDGSRTVEIVARYVQGRIFPAWTSR
TLDVGPSACYEAIARAAGTNVSPDDVEERLAERGEIGDVAASYDFGGQRGLGAFGGGGDA
AGGEDRTVLAVDETLRELAAAEGAGSQDRKVDLLFGLFNRCSSDEARYLARLVLAEMRIG
VGEGTVRDAIGEAFDVPVEDVERALQVSNDYGEVARVAREDGREGLDAMTLAVGRPIQAM
LAQTGTVTGALEDWDVAGVERKYDGARVQLHHDPIGVAVEDADATAVGESTAETRVFSRN
MEDVTDALPEIVEFADDRLEEPVILDGEVVAIADDGEPLPFQEVLKRFRRKHDVAKARED
VAVRPVFFDCLHADGEDLLEEPLATRHDRLERVLREDPEQEPAQIEGLSLLWRTDDPDEI
ERIDAEALEAGHEGIMLKAPDSTYSPGRRGKHWRKRKPDVETLDCVVTGAEWGEGRRATF
LGTFELSVRAGDSEKRRSAGSAVEPQNLETVGKVATGITDEKLAELTELLEPHVASEDGK
RVELEPAVVFEVGYEEIQSSPTYSSGYALRFPRFVGVRSDKDPDDADTVARLERLRE
NT seq 1794 nt   +upstreamnt  +downstreamnt
atggagttcgccacgttcgccgaccgcgccgccgcgatcgaagccgagcccgcggacctc
gagatcgtcgcccacgtcgcgaccctgctcgaggacgctgccgacggggacggctcgcgg
acagtcgagatcgtcgcccgctacgttcagggacggatcttccccgcatggacctcgaga
acgctcgacgtcggccccagcgcctgctacgaggcgatcgcccgcgcggcggggacgaac
gtctcccccgacgacgtcgaggagcgactcgccgagcgcggcgagatcggcgacgtggcc
gcgagctacgacttcggcggccagcgggggctgggcgcgttcggcggtggcggcgacgcg
gccggtggcgaggaccgcaccgtcctggcggtcgacgagaccttacgcgagctcgcggcc
gccgagggggccggcagccaggatcgcaaggtcgacctgctcttcggcctgttcaaccgg
tgttcgagcgacgaggcccggtacctcgcgcggctcgtcctcgcggagatgcgcatcggc
gtcggcgaggggacggtcagggacgcgatcggcgaggcgttcgacgtccccgtcgaggac
gtcgagcgcgccctgcaggtgtcgaacgactacggcgaggtcgcccgggtcgcccgcgag
gacggccgcgaggggctcgacgcgatgactctcgcggtcggccgcccgatccaggcgatg
ctcgcccagaccggcaccgtcacgggggcgctcgaggactgggacgtggcgggcgtggag
cggaagtacgacggggctcgcgtccagctgcaccacgatccgatcggcgtggcggtcgag
gacgcggacgcgaccgctgtcggcgagtcgaccgccgagactcgggtcttctcgcgaaac
atggaggacgttaccgacgcgctccccgagatcgtcgagttcgccgacgaccgcctcgag
gagcccgtcatcctcgacggcgaggtcgtcgcgatcgccgacgacggcgagccactgccg
ttccaggaagttctcaagcggttccgtcgcaaacacgacgttgcgaaggcccgcgaggac
gtcgcggtgcggcccgtcttcttcgactgtctgcacgccgacggcgaggacctgctcgag
gagccgttggcgacccgccacgaccgcctcgagcgggtcctgcgcgaggaccccgagcag
gagcccgcccagatcgaggggctgtccctgctgtggcgcaccgacgaccccgacgagatc
gagcggatcgacgccgaggccctcgaggcgggccacgaggggatcatgctcaaggccccc
gactcgacgtactcgccgggccggcgcgggaagcactggcgcaagcgaaagcccgacgtc
gagacgctggactgcgtcgtcacgggcgcggagtggggcgagggacggcgggcgacgttt
ctggggacgttcgagctgtcggtgcgagcgggcgacagtgagaaacgacgttccgctggc
tctgcggtggaaccgcagaacctcgagacggtcggcaaggtcgcgaccggaatcacggac
gagaagctcgccgagctgaccgagctgctcgagccccacgtcgccagcgaggacggcaag
cgcgtcgagctcgagcccgcggttgtcttcgaggtcggctacgaggagatccagtcctcg
ccgacgtactcgtcggggtatgccctccgattcccgcggttcgtcggcgtgcgctcggac
aaggatcccgacgacgccgacaccgtagcgcgactcgagcggcttcgggagtag

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