Nocardia sp. CS682: DMB37_24770
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Entry
DMB37_24770 CDS
T06040
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
noz
Nocardia sp. CS682
Pathway
noz03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
noz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
DMB37_24770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
noz03400
]
DMB37_24770
Enzymes [BR:
noz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
DMB37_24770
DNA repair and recombination proteins [BR:
noz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
DMB37_24770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QBS42832
UniProt:
A0A4P7H6U6
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All DBs
Position
5447208..5449541
Genome browser
AA seq
777 aa
AA seq
DB search
MASRRRFGGIEVELSNLDKVLYPATGTTKGEVIAYYSAIAPAMLPHIAGRPVTRKRWPNG
VDEPSFFEKNLPAHAPSWIERHTIQHSDRKVTYPLIDSEAGLAWLGQQAALELHVQQWRF
DGDSVGPATRIVFDLDPGPDMELADCARVALAVRDMIEDIGLRAFPVTSGSKGIHIYVPL
DREVSSSGASTVAKQVATNLERLHPDLVTATMAKAARGGKIFLDWSQNNAAKTTIAPYSM
RGRAEPTAAAPRTWKEIEHRKKLRHLRFDEVLARWQADGDLLAELDPPLPQGNTASPESG
ADALAKYRSMRDPARTPEPVPAERPEPGEGNRYVVQEHHARRLHWDVRLERGGVLVSWAV
PKGPPTTSDQNRLAVHTEDHPLEYLDFHGAIPKGQYGAGEMTIWDSGTYETEKWRDDEVI
VRFHGERLNGRYALIQTNGNQWLMHLMREQHPDGADPSDKAASSLGEEPAKPAGRIIRVS
SGPSPFPRGLAPMLATPGDVADLTADEWCFETKWDGFRLIAEIESGAVTLRSRHGIVVNN
RYPGMAVLGEELAGHSVVLDGEAVVFDDHGVANLGLLQADAARAVFVGFDVLYLDGTSLV
RKRYSDRRRVLEALAGTAPSLLVPPRLDGSGADAVRYSQDQGMEGVVAKRKDSVYLPGKR
GHSWVKQRNWRTQEVVIGGWRRSDARDFKSLLVGIPYEGRLIYVGRVGTGFNDTDMRELA
NRLSPSERKTSPFDNDLTAEERKEAVWVTPKIHGTVRFMNWTETGRLWHPAWLGATD
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcccgccggcgattcgggggtatcgaggttgaactcagcaacctcgacaaagtg
ctgtatccggccaccggcaccaccaaaggcgaagtcatcgcctactattcggcgatcgcg
cctgcgatgctgccgcatatcgccggtcgtccggtcaccaggaagcgctggcccaacggg
gtcgacgagccttcctttttcgagaagaatcttcccgcgcacgcgccgtcgtggatcgaa
cggcataccatccagcattccgaccgcaaggtcacctatccgctgatcgactccgaggcc
gggctggcctggctcgggcagcaggcggcgctggaattgcatgtacagcaatggcgtttc
gacggcgactcggtcgggccggcgacccgcatcgtcttcgatctcgatccgggtcccgat
atggagctggcggattgcgctcgggtggcgctcgcggtgcgcgacatgatcgaggacatc
ggcctgcgcgcgttcccggtcaccagtggtagcaagggaattcacatctacgtcccgttg
gatcgcgaggtgagttcgagcggcgcgtccacggtggccaaacaggtggccacgaatctc
gaacggctgcatccggatctggtcaccgcgacgatggcgaaggcggcccgcggcggcaag
atcttcctcgactggagccagaacaacgccgccaagaccacgatcgcgccgtactccatg
cgcggccgcgcggagcccaccgcggcggccccacgcacctggaaagaaatcgagcaccgg
aagaagctgcggcacttgcgcttcgacgaggtcctcgcgcgctggcaggccgacggcgac
ctgctcgccgagctcgatccgccactgccgcagggcaataccgcgtcgccggagtccggt
gccgacgcgctggccaagtatcggtcgatgcgcgacccggcgcgaactcccgagccggtg
cccgccgagcggccggaaccgggcgagggtaaccgctacgtcgtgcaggaacatcatgcg
cggcggctgcattgggatgtgcggctcgaacgcggcggcgtgctggtgtcctgggcggta
ccgaagggcccgccgaccacctcggatcagaaccggctcgccgtgcacaccgaggaccat
ccgctggagtacctggacttccacggcgccatcccgaaggggcagtacggcgccggcgag
atgacgatctgggattccggcacctacgagaccgagaagtggcgcgacgacgaggtgatc
gtccgattccacggtgagcggctcaacgggcgctacgcgctcatccagaccaacggcaac
cagtggctgatgcatctgatgcgcgagcagcatcccgacggtgccgatccgagcgacaag
gctgcgagcagtctcggcgaagagcccgccaagccggccggccgcatcatccgggtgtcg
agcgggccctcgcccttcccgagagggttggcgccgatgctggcgacccccggtgacgtc
gccgatctcaccgccgacgagtggtgcttcgagaccaagtgggacggcttccggctgatc
gctgaaatcgagtccggcgcagtcacgttgcgcagcaggcacggcatcgtggtgaacaac
cgctacccggggatggcggtgctcggcgaagagctggccgggcacagtgtggtcctggac
ggcgaggcggtggtcttcgacgaccacggggtggccaatctcggcctgctccaagcggat
gcggcgcgggccgtgttcgtcggcttcgacgtgctgtatctggacggcacttcgcttgtc
cgcaaacggtattcggatcggcgccgggtgctggaggcgctcgccggtaccgcgccctcg
ctgctcgtgccgccgcggctggacggttccggggccgacgcggtgcgctacagccaggac
caaggcatggaaggcgtggtcgccaagcgcaaggactcggtgtacctgcccggcaagcgc
ggtcactcctgggtgaagcagcgcaattggcgcacccaggaggtggtcatcggcggctgg
cggcgcagcgacgcgcgggacttcaagtcgctgctcgtcggcatcccgtacgagggcagg
ctgatctacgtcggccgggtcggcaccggattcaacgacaccgacatgcgggagctggcc
aaccgcctgagcccgtcggagcggaagaccagcccgttcgacaacgacctgaccgccgag
gagcgcaaggaagcggtctgggtgaccccgaaaatccatggcacggtgcgcttcatgaac
tggaccgagaccggccggttgtggcatccggcgtggttgggcgccacggactga
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