Nothoprocta perdicaria (Chilean tinamou): 112955300
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Entry
112955300 CDS
T07556
Symbol
COL18A1
Name
(RefSeq) collagen alpha-1(XVIII) chain
KO
K06823
collagen type XVIII alpha
Organism
npd
Nothoprocta perdicaria (Chilean tinamou)
Brite
KEGG Orthology (KO) [BR:
npd00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
npd04147
]
112955300 (COL18A1)
00535 Proteoglycans [BR:
npd00535
]
112955300 (COL18A1)
00536 Glycosaminoglycan binding proteins [BR:
npd00536
]
112955300 (COL18A1)
Exosome [BR:
npd04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
112955300 (COL18A1)
Proteoglycans [BR:
npd00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
112955300 (COL18A1)
Glycosaminoglycan binding proteins [BR:
npd00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
112955300 (COL18A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Endostatin
Collagen
Collagen_trimer
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
112955300
NCBI-ProteinID:
XP_025904367
LinkDB
All DBs
Position
Unknown
AA seq
1683 aa
AA seq
DB search
MAPASRCLGFLLFLACGCSCEAQLLNWFWGGSKPSRTPLASAGRTAASEPTARPLSTPAA
PRPSGSPWMVAQDEESSGDVASLLGKDLGAGTAVPTGSESVSSTAVSTGSESISGTAVPD
GNESVSGTTVPDGNESVSGTAAPTGSESVSGTAVTDGNESMSSTAVTDGNESMSSTAVTD
GNESXSGTAVSDGNESVSGTAVPVGSESVSGTTVPDGNESVSGTAAPMGSESVSGTTVPA
RNESVSSVELLHAAEGTRGGREPGDGSVTXTPESTAPPLTGITSTAAPPSIAPEHGQDVT
SNSTETPPATTGPELVLPEPTSPLGERSGTRVSLQRPMAPRPENLSTEVSLLELIGDPPP
EEIQKIYGPDNNPGYVFGPNANTGQVARYHLPSPFYRDFSLLFHIQPTTPRAGVLFAITD
SLQSIIYVGVKLSELRAGKQQIIFYYTEPGSKSSYAAATFTVPTLLNQWTRFAISVEEDE
VXLYLDCEEHERVRFERSPDEMELEDGSGLFVAQAGGADPDKYQGVIADLKLKGDPRAAE
HQCEEEEDDAEEVSGDFGSGAEDGHHALGKDKGIPGLVDAVPVTSPPVAVGSMPGIAAGS
LPQAERTRVLDTLLISAAGAGAKGEKGEKGERGPKGDSGTGGVSGTGGAKGAKGEKGDAG
VKGSAGFGYPGSKGQKGEPGEPGPPGSAPDGSGTERLNXPPGPTGPPGPPGKDGAPGRDG
EPGDPGEDGKPGDTGPQGFPGTPGEPGMKGEKGDPGIGPRGPPGPPGPPGPPGPSFKHDK
LTFIDMEGSGFGGDPDTLRGPRGPPGPPGPPGVPGLPGEPGRFGMNRTDLPGPPGLPGRD
GSPGPPGPAGPPGPPGTDGMVGQPGPKGERGDVGDLGLPGAPGPKGSKGETGPAGAPGEM
GLAGLPGPIGPRGQPGPPGPPGPPGPGYEAGFGDMEGSGLPFAAGTPGPRGPEGPQGPPG
LPGTKGDAGSPGQPGLPGLKGDPGLPGVDGRPGLEGFPGPQGPKGDRGSPGEKGERGRDG
VGLPGPPGLPGPPGQVIYLSNEDKSLAALPGPEGRPGHAGFPGPMGPKGDPGSPGFQGSP
GLKGEKGEPGVIISPDGTIIAANVKGEKGEPGPRGPAGPSGPHGRSGQKGEIGFPGRPGR
PGMNGLKGEKGDPADVSGMLGPRGLPGPPGPPGPPGPPGNVIYDNSNAFSDASHPALPAF
PGFHQFPGQKGEKGDVGAPGPPGQFPYDLSRFSANLXGEKGETGLKGEKGEPGGTPLYGS
SISTLPGPPGPQGYPGLPGPKGDSIVGPPGPPGPQGPPGVGYEGRQGPPGPPGPPGPPSF
PGPHRQSISIPGPPGPPGPPGPPGTGGTSPALRAVPTYQAMLSAAHELSEGWLVFLADRQ
ELYVRVRNGFRKVLLEEHTLISSSALDNEVYDKPPNVHYSHSGAVPSGSQHPYQPRGPLH
PLRNHSPPPTARPWRGDEIVANQHRLPEQPALHHGTQHQQELLNSYYINRRPDPAPVAAH
VHQDFQPALHLVALNAPLSGSMRGIRGADFQCFQQAREVGLLGTFRAFLSSRLQDLYSIV
RRADRSTVPIVNLRDEVLFSNWEALFAGSEAPLRPGARILSFDGRDVLRDSAWPQKSVWH
GSDAKGRRLPDSYCETWRTEERAAMGQASSLSAGKLLEQAASSCQHAFVVLCIENSFMTA
SKK
NT seq
5052 nt
NT seq
+upstream
nt +downstream
nt
atggctccggcctcgcgctgcctgggctttctgctttttctggcttgtggctgctcctgc
gaagcgcagctcctgaactggttctggggtggctccaagccctccaggacaccgctagcc
tctgcagggagaaccgctgcgtccgagccgacagccaggccactctccactccggcagct
ccccggccaagcggatccccgtggatggtggcgcaggacgaggagagctcgggggacgtc
gccagcctgctgggcaaggatctgggtgctggcacagcggtgcccacgggcagtgagagc
gtgtccagcacggcagtgtccacaggcagcgagagcatatctggcacagcggtgcccgac
gggaatgagagtgtgtccggaacaacagtacctgacgggaacgagagtgtgtccggcaca
gcagcacccacgggcagtgagagcgtgtccggcacggcagtaactgatgggaatgagagc
atgtccagcacggcggtaactgatgggaatgagagcatgtccagcacggcagtaactgat
gggaatgagagcrtgtctggcacagcggtgtccgacgggaatgagagtgtgtccggcacg
gcagtgcccgtgggcagtgagagcgtgtccggcacgacggtacctgatgggaatgagagc
gtgtccggcacagcagcacccatgggcagcgagagcgtgtccggcacgacggtgcctgca
aggaatgagagcgtgtccagcgtggagctcctgcacgcagctgaaggcacccgtggcggt
cgtgagccgggggacggcagtgtcaccrggacaccggagagcacggcaccaccactgaca
ggcatcacttcaaccgccgcacctcccagcatagcacccgagcacgggcaggatgtgacc
agcaactccaccgaaacccccccagcaacgacgggaccagagctggtgctccccgagccc
acatcgccgctaggcgagcggagcgggactcgggtgtctttgcagaggccgatggcaccc
cgtccagagaatttgagcacagaagtcagcctcctggagctgattggagacccgccgcca
gaggagatccagaaaatttacggccccgacaacaacccaggctatgtctttggacccaat
gccaacacaggccaggtggcccggtaccacctgcccagccccttttaccgggacttttct
ctgctgtttcacatccagcccaccaccccgcgggccggcgtcctctttgccatcacagac
tctttgcagagcatcatctacgtgggcgtcaagctctcggagctgcgggcgggtaagcag
cagatcatcttctactacacagagccgggctccaagagctcctacgcggcggccaccttc
accgtgcccaccctgctgaaccagtggacacgcttcgccatcagcgtggaggaggacgaa
gtcrtcctctacctggactgtgaggagcacgagcgggtccgcttcgagcgctccccagac
gagatggagctggaagatgggtctgggctcttcgttgctcaggctggaggagccgacccg
gataaataccagggggtgattgccgacttgaagctcaaaggggatccccgggcagctgag
caccagtgtgaggaagaggaggatgatgctgaagaggtctcgggagattttggcagcgga
gcagaggatggacaccatgccttgggaaaggacaagggcatcccggggctggtggatgct
gtccccgtcacctctccgcccgtggctgtgggcagcatgccggggatcgccgcgggatcc
ctgccgcaagcagagcgcacccgagtgctggacacgctgctgatatccgcagcaggcgct
ggtgccaaaggcgagaagggggagaagggggagcgtggcccgaaaggggactcgggaacc
ggcggcgtctcggggacgggcggcgccaaaggtgcaaagggagaaaaaggtgatgcaggc
gtcaagggcagcgctggatttggctaccctggctccaagggccagaaaggagaaccaggc
gagccaggcccccctgggagtgcccccgacggctccggcacggagcggctcaacrggcca
ccaggacccactggtcctccaggaccgcccggcaaagacggagcccccggcagggacggc
gagcccggtgatcctggtgaagatggcaaacctggggacacggggccccagggcttcccc
gggacaccaggagagccggggatgaagggcgagaagggtgatcctggaatcggccccagg
ggcccccctggaccaccaggcccccctggaccacctggaccttccttcaaacatgacaag
ctgaccttcatcgacatggagggctccggctttggtggcgatccagacaccctgcggggt
ccccgcgggccgcctgggccaccggggcctcctggcgtgcccggcttgccaggggagccg
gggcgattcggcatgaaccgcacggacctgccgggaccaccagggctgccaggacgagac
gggagccccgggccgccggggccagcgggtcctccaggtcctcctgggacagacgggatg
gttgggcagccggggcccaaaggagagcggggtgatgtgggggacctgggcctccctgga
gcacctggacccaagggcagcaaaggagaaacagggccagcaggagcaccaggagaaatg
gggttagctggccttccyggacccatcggacctcgagggcagccgggtcccccaggccct
cctggaccaccagggccggggtacgaagctggctttggtgacatggagggctcagggctg
ccgtttgcagctggtacccctggaccccgcggacctgaaggaccacaggggccaccagga
ttgccaggaaccaagggagatgctggcagccccgggcaacctggcttaccagggctgaag
ggagaccctggcctgcctggtgtggatggccgccctgggctggagggcttccccggacca
cagggacccaagggtgacagaggcagccccggtgagaagggcgagcgaggccgagatggt
gttgggttgcccggcccccccgggttacctggcccaccaggacaggtcatctacctctca
aacgaagacaagtctttggcagctttgccaggcccagagggcagaccaggccatgctggc
ttcccgggccctatgggaccaaaaggagacccagggtcacctggcttccagggctcccca
gggctgaagggcgagaagggagagcctggtgtcatcattagcccggacgggaccatcata
gctgctaatgtgaaaggagaaaagggggagccagggccacggggaccagcgggcccatct
ggcccccacggacggtctggacagaagggagaaattggctttccgggcagacctgggcgg
ccaggcatgaaygggctcaagggcgagaagggcgaccctgccgacgtcagcggcatgctg
ggcccgcggggtctcccaggtccccctggcccaccaggacctcctgggccacctggcaat
gtcatctatgacaacagtaatgccttcagtgacgccagccatcctgcgctgccagccttc
cctggcttccatcagtttccaggtcaaaagggagaaaaaggagatgttggtgctccaggt
cccccaggccagttcccgtacgacctgagccgattcagtgccaacttgcrgggtgaaaaa
ggggagactggcctcaagggcgagaagggtgaaccaggcgggacaccactgtatggctcc
agcatctccacactgccaggcccacccggtccccagggctaccctggcctgccgggtccc
aagggggacagtattgttggaccaccagggcctccgggacctcagggacctcctggcgtt
ggatatgaggggcggcagggtcctcctggccctcccggcccccctggtcctccttccttc
ccaggcccacacaggcaaagtatcagcattcctggccctcctgggccaccaggaccccct
ggaccaccaggtaccggcgggacatctcctgcgctacgtgcygtgccaacgtaccaggcc
atgctgagcgctgctcacgagctgtccgagggctggcttgtcttcctggctgaccggcag
gagctctacgtgcgcgtgcgcaatggtttccgcaaggtgctgctcgaggagcacaccctg
atctccagctctgctctggacaacgaggtctacgacaagccacccaacgtccactactcc
cacagtggtgccgtcccctccgggtctcagcacccctaccagcctcgtgggccccttcac
cctctccgcaaccacagcccaccacccactgcccggccctggcgaggggacgaaatcgtg
gccaaccagcaccgccttcccgagcagcccgcgctccatcacggcacccagcatcagcaa
gagctcctgaacagctactacatcaaccgcaggccagatccagcccctgtagccgcccac
gtgcaccaggacttccagcctgccctccacctggtagccctgaatgccccgctgagtggc
agcatgcgcggcatccgcggcgccgacttccagtgcttccagcaagcccgcgaggtcggc
ctcctgggcaccttccgggccttcctctcctcccgcctccaggacctctacagcatcgtg
cgcagggccgaccgcagcacggtgcccatcgttaacctccgggacgaagtgctcttcagt
aactgggaggccctgtttgcgggcagcgaggccccgctgcggcccggcgcccgcatcctc
tccttcgacggccgggatgtcctgcgggactcagcgtggccccagaagagcgtgtggcac
ggctcggacgccaagggccggcggctgcccgacagctactgcgagacgtggaggacggag
gagcgcgccgccatgggccaggcctcctcgctgagtgcgggcaagctcctggagcaggcg
gccagcagctgccagcacgccttcgtggtgctgtgcatcgagaacagcttcatgaccgcc
tccaaaaaataa
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