Nanorana parkeri (Xizang Plateau frog): 108787443
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Entry
108787443 CDS
T04897
Symbol
COL4A1
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
npr
Nanorana parkeri (Xizang Plateau frog)
Pathway
npr04510
Focal adhesion
npr04512
ECM-receptor interaction
npr04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
npr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108787443 (COL4A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108787443 (COL4A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
108787443 (COL4A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
npr04147
]
108787443 (COL4A1)
00536 Glycosaminoglycan binding proteins [BR:
npr00536
]
108787443 (COL4A1)
Exosome [BR:
npr04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
108787443 (COL4A1)
Glycosaminoglycan binding proteins [BR:
npr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108787443 (COL4A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
108787443
NCBI-ProteinID:
XP_018412503
LinkDB
All DBs
Position
Unknown
AA seq
1668 aa
AA seq
DB search
MNWALLAGLLLLLQGFISNTESAACNGCATGKCDCSGAKGQKGERGLPGLPGIIGFPGLQ
GPEGPLGPLGQKGDTGEPGLPGTKGNRGPSGAAGFPGNPGLPGIPGQDGPPGPPGIPGCN
GTKGEIGPFGPPGLPGLIGYPGAPGPSGTKGDPGDVIGFMTKGEKGFSGSPGLPGTPGLP
GLEGPLGPSGPPGRQGSPGSSGPPGPKGSMGLSFHGPQGEKGEPGLPGPPGPQGPASFDR
PNATEVYGIKGAKGALGDKGDRGFSGVPGSSIKGEKGDPGKAGPRGKPGKDGDQGEKGYT
GVPGNPGFNGFPGQDGQKGIKGERGFQGPPGAVIDDGRPTVVGEKGDTGSPGYPGSRGDR
GAKGEPGLQGFPGSPGTSIPGPPGAPGYTGERGENGNPGLPGLSLPGEKGRQGPPGPQGS
AGPPGPIDPTHECIPGQTGDRGSDGNPGQQGFAGERGQKGDKGDACPLCETMPSPLPGPS
GPQGPPGKTGPPGQPGDKGDRGQPGYDGLPGATGPQGVPGLLGSPGAKGEPGEVYFDQQL
KGEKGETGFPGQSGTPGKDGRPGRDGFPGQPGPKGALGTIGAKGERGPSGDSGFPGVSGE
KGLPGPPGVGQPGQPGDRGEPGAPGFVGIPGNPGIKGEPGKAMVVVGEPGTMGPAGYPGL
PGEQGEKGAVGFPGRSGFPGEKGDSGKEGKGLPGPPGEKGYPGIDGPQGLDGVPGQPGHD
GLPGNQGRPGEKGEPGLGLPGPKGLSGPPGPTGPTGVKGSTGSAGIPGEQGLPGVPGYSG
AKGDTGPAGAPGMRGNPGVPGFGPPGEQGPQGVPGSLGVSGPTGQKGERGYPGFPGADMP
GPKGDKGKAGMPGSMGMPGLPGQPGPAGKDGSPGFQGQKGEMGFMGVPGISGQPGSPGNP
GLPGEKGESGPPGFRGEPGISGFKGEKGEGGLQGPPGSISDMGHMKGEKGDQGDRGGTGH
EGKQGTQGETGDTGMPGKDGDQGMPGKQGIKGDKGSQGVPGSPGLSGHKGSMGEMGLPGP
SGPKGEHGIQGTPGLPGVTGIKGERGLKGEEGSPGVGIPGPPGTKGDPGAHGQQGYPGER
GEKGDGGIPGMPGLPGVKGSSGHSGLPGSPGIPGEKGAKGFPGLGGVSGSKGQPGEPGIQ
GPPGSFGEKGEPGLDGIPGTPGEKGDHGLPGRGLPGFPGEHGEKGFKGEAGLPGAPGLPG
FPGLKGDQGFPGSEGLQGQPGFPGPPGVAMEGPKGDKGLQGPPGFRGAPGAVGVPGPSGH
DGLKGDKGEQGWPGAPGFPGVKGESGIQGLPGDAGTAGREGQKGDVGSPGFQGVPGLKGS
YGPTGEKGDLGHPGVPGPKGTQGHPGPAGQLQIIKGEPGPPGPSGPSGPKGFPGYHGPKG
EQGDIGAVGLPGLPGVSGMDGFPGQKGEFGLSGPTGPRGYPGPPGSDGLPGPIGLPGLPS
MAHGFLVTRHSQAPEEPSCPLGTVPVYTGYSLLYVQGNERAHGQDLGAAGSCLRKFSTMP
FLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPITGDEIKPFISRCSVCEAPAMVMAVH
SQTIQIPQCPDGWISLWIGYSFVMQTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRGT
CNYYANTYSFWLATIERDEMFKKPTPSTLKAGDLRTHVSRCQVCMRRT
NT seq
5007 nt
NT seq
+upstream
nt +downstream
nt
atgaactgggcactgttggctggactgcttctcctcctgcaggggttcatcagtaacacc
gagtctgcggcatgtaatggatgtgcaactggtaaatgtgactgcagtggagcaaaagga
caaaaaggagaacgaggtttacctggtctacctggcatcattggttttcctggacttcaa
ggacctgaaggaccactaggaccattgggacagaagggtgacactggtgagccaggactt
ccaggaacaaaaggaaacagagggccttccggagcagccggatttccaggaaatccaggc
ctaccggggataccaggacaagatggccctcctggcccacccggtattccaggctgcaat
ggcacaaagggagaaattggaccttttggacctcctggcctaccagggctaattggttat
cctggtgctccaggaccttcaggaactaagggagatccaggagatgtcattggttttatg
acaaaaggcgaaaaaggattttccggaagtccaggtttaccaggcacacctggactcccc
ggattagaaggtccgttaggaccttctggaccaccaggtcgtcaaggatcaccagggtcc
tcaggtccaccaggaccaaagggctccatgggcctgagttttcatggaccgcaaggtgaa
aaaggtgagcctggtcttccaggtccccctggtccccaaggtccagcatcctttgacaga
ccgaatgcaacagaagtatacggaataaagggagcaaagggtgcactaggtgacaaaggc
gacagaggattttcaggtgttcctggaagtagcattaaaggagaaaaaggagaccctgga
aaggcaggaccaaggggaaaacctggaaaagatggtgatcagggagaaaagggatatact
ggagtcccaggtaacccgggttttaatggatttcctggacaggatggacaaaaaggaata
aagggagagcgcggatttcagggacctccaggagccgtaatagatgatggccggcctact
gtagttggagagaagggagacactggatcacctggttatcctggtagcagaggagatagg
ggtgctaaaggtgaacctggactacaaggatttcccggatcaccaggaacatctattcct
ggcccccctggagcaccaggatatacaggggagaggggtgaaaatggaaatcctggattg
ccaggtttatccttaccaggggagaagggcagacaaggcccacctgggcctcaaggatca
gcaggtccaccaggccccatcgatccaacccatgaatgcattcccgggcaaactggtgac
cgtggatccgatggaaacccaggccaacaaggatttgcaggagaaaggggacagaaaggt
gacaaaggtgatgcctgtccattatgtgaaacaatgccatcaccacttcctggtccatca
ggtccccaaggcccacctggtaaaacaggaccgcctggccagccaggtgacaaaggagac
agagggcaaccaggctacgatggcttaccaggagcaactggacctcaaggtgttccaggt
ctgctagggagtcctggagcaaagggtgaacccggggaagtttattttgatcagcaacta
aagggtgaaaagggagagacaggtttcccgggacaatcaggaactccaggaaaagacgga
agaccaggaagagatggatttccaggccagcctggccccaaaggtgctttgggcacaatt
ggtgcaaaaggtgagcgtgggccatctggtgacagcggatttcctggggtttctggagaa
aaaggtttgccaggacctccaggagtagggcaaccaggacagcctggagacagaggagaa
ccaggagctcctggttttgtaggaatacctggaaaccctggtattaaaggtgaacctgga
aaagccatggttgttgttggagaaccaggcacaatgggacctgcaggttatcctggatta
cctggggagcaaggtgagaagggtgctgttggttttccaggaagatctgggtttcctgga
gagaaaggagactctggtaaagagggtaaaggactccctggacctcctggagaaaaaggt
taccctggaatagatggcccacagggattagatggggtacctggtcaaccaggtcatgat
ggtttacctggaaatcaaggtcgacctggagagaaaggtgagcctgggctgggtcttcca
ggtcctaaaggattgtctggaccaccaggtcccactggccctactggagtgaaaggaagt
acaggatcagccggtatccctggtgaacagggtctcccaggagttcccggttattcagga
gctaaaggtgatactggccctgctggggcaccaggcatgagaggtaatcctggtgtacct
ggttttggtcctcctggagaacaagggcctcaaggagtaccgggatctcttggagtctca
ggccctactggacagaagggagaaagaggatatcctggtttccctggagcagatatgcca
ggtccaaagggagataaggggaaagctggcatgccaggatctatgggaatgccaggattg
cctgggcagccaggtccagcaggaaaagacgggtctccaggtttccaaggccaaaaagga
gaaatgggttttatgggagttccaggaatctctggtcagccaggttccccaggaaatccg
ggattacctggagaaaaaggtgaatctggtccccctggtttccgtggagagcctggaatt
tctggttttaaaggtgaaaagggtgaaggtggactgcaaggaccaccaggatctatttca
gacatgggacacatgaagggcgaaaaaggagatcagggtgacagaggtggcacagggcat
gaaggaaaacaagggacacagggtgaaacaggagacactggaatgcctggaaaagatgga
gatcaaggaatgccagggaaacaaggaataaaaggagacaagggtagtcaaggtgttcca
ggaagtccaggcctttcaggtcataaaggatcaatgggagaaatgggcctaccagggcct
agtggaccaaaaggcgaacatggtatacaaggcactccaggtctaccaggtgtaactgga
ataaaaggtgaaagagggcttaaaggtgaagagggttctccaggcgttggcattcctgga
cctccagggactaagggtgatcctggagcccatggccaacaaggttatccaggtgaaagg
ggtgaaaaaggtgacggtggtatccctgggatgcctgggttaccaggtgtaaagggatca
tcaggtcattcaggacttccaggtagcccaggaattcctggagagaagggagctaaagga
ttccctggactgggtggtgtttccggatcaaaaggacaaccaggtgaacctggaattcag
ggacctcctggttcatttggagaaaagggtgaaccaggccttgatggaattccaggaaca
cctggtgaaaagggtgatcatggtttaccaggaagaggcctgcctggattccctggggaa
catggtgaaaagggtttcaaaggtgaagctggtttacctggtgcacctggcctccctggc
tttcctggccttaaaggtgatcaagggtttcctggcagtgaaggacttcaagggcaacca
ggttttcctggacctcccggggtggcaatggaaggtccaaaaggtgacaaaggacttcag
ggaccacctggattccgtggtgctccgggtgctgtgggcgttcctggcccttcaggacat
gatggattgaaaggagacaaaggagagcagggttggcctggagctcctggtttcccggga
gtgaaaggtgaatctggaatacaaggtctacctggagatgctggtactgcaggaagagaa
ggccaaaaaggtgatgttggttccccaggatttcaaggggttccaggtttgaaaggttca
tatggacccactggagagaaaggagatttaggacatcctggggtacctgggcctaaagga
acacaaggtcatccaggccccgcaggtcaacttcaaataattaagggagaacctggccct
ccaggaccatcaggcccctctggccctaaaggatttcctggatatcacggtcctaaggga
gagcaaggtgatattggtgctgtaggactgcctggactacctggagtgtcaggaatggat
ggtttccccgggcaaaaaggagaattcggtctctctgggccaacaggtccaagggggtat
cctggcccacctggttcagatggtttacctggacccattggtttacctggacttccgtca
atggctcatggattcctggttacaagacacagccaggcacctgaggagccatcttgtcct
ctgggcacagtcccagtatacaccggatactcacttctctatgtacagggaaatgaaaga
gcacatggtcaagacctaggtgctgctggaagctgcctacgtaaattcagcacaatgcct
ttcctgttctgcaacattaataatgtgtgcaacttcgcatcaagaaatgattattcctat
tggctctcaacacctgaaccaatgccaatgagcatggctcctatcacaggggacgaaatc
aagcctttcattagcagatgcagtgtttgtgaagcacctgccatggtgatggcagttcat
agtcaaacaattcagatccctcaatgtccagatgggtggatttcattgtggattggatat
tcatttgtaatgcaaaccagcgctggtgctgaaggttctggccaagctttggcatctcca
ggctcctgtctagaggaattccgtagtgcaccatttattgagtgccatggacgaggaacc
tgcaactactatgccaatacatacagcttttggctggctacaatcgagagggatgaaatg
tttaaaaaacctacaccttcaaccctgaaagctggagatctccgcacacatgtcagccgc
tgtcaagtatgcatgagaaggacttaa
DBGET
integrated database retrieval system
