Nanorana parkeri (Xizang Plateau frog): 108788524
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Entry
108788524 CDS
T04897
Symbol
COL11A1
Name
(RefSeq) collagen alpha-1(XI) chain isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
npr
Nanorana parkeri (Xizang Plateau frog)
Pathway
npr04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
npr00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
108788524 (COL11A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
npr00536
]
108788524 (COL11A1)
Glycosaminoglycan binding proteins [BR:
npr00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108788524 (COL11A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
108788524
NCBI-ProteinID:
XP_018413799
LinkDB
All DBs
Position
Unknown
AA seq
1867 aa
AA seq
DB search
MERWNTRWKTKRRLWDSSLSSLILITLTFLLQAAEVRGAGPVDVLRALDFHNTPEGVSKT
AGFCTNRKASKGSDTAYKVHKNAQLSVPMNQLYPGGVFPKDFSILLTVKPKKGLQSFILS
IYSGEGTQQIGVEVGRSPVFLYEDQNRLPSPEDYPIFSTVNVADGKWHRIAISVEKKTIT
MIVDCKKKISKPLPRSDRPVVDTNGIAVFGTRILEEEVFQGDIQQLLIIDDPKAAYDYCE
HYMTDCDKPAHLLPQAQDPQVDEYAPDEQVDYDYMYGETDYKETDYVTVAPSITEEYVAQ
TEKKKANSKTKKKPVPPKSKDKPPKVTPKNSFAAKKKKGKTDYQASTRKRIGANVVDYIP
EQYGEVDYGYQTDTPALTTGLNEKTPVDETLVEETFVDEPFLEEYVTGEDYDSEKKLVEE
TDYGVKAVDPTPTEPVVVGDLEKDLYDYTDYEEKETNPTREEFGPGVAAETDVSETNVNN
YGGYGEKGQKGERAVIEPGMLIEGPPGLEGPAGLTGPPGLQGPSGPSGDPGERGPPGRPG
LPGADGLAGPPGTMLMLPFRYSSDGEKGPPVSAQEAQAQAILQQARIAMRGPPGPMGLTG
RSGPVGSPGATGIKGESGDSGPQGPRGIQGSPGSMGKAGKRGRPGADGARGMPGEPGSKG
DRGFDGLPGLPGEKGHRGDKGPLGPPGPPGEDGDRGEDGEVGPRGLPGEPGERGLLGPRG
SPGPPGQHGVAGVDGPPGPKGNLGPQGEPGPAGQQGIPGTQGLPGPQGPIGPPGDKGPHG
KPGLPGLPGSDGPPGHPGKEGPPGEKGAGGPNGPQGPIGYPGPRGVKGADGVRGLKGGKG
EKGEDGFPGFKGDMGLKGDRGEVGPLGPRGEDGPEGPKGRSGPNGDLGSAGPAGEKGKLG
VPGLPGYPGRQGPKGSTGFPGFAGANGEKGARGVAGKPGPRGQRGPTGPRGARGPRGPTG
KPGAKGTSGNDGPPGPPGERGPQGPQGPAGFSGPKGPPGPPGKDGLPGHPGQRGETGFQG
KTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGSAGKEGAKGDPGPQGVSG
KDGPAGLRGFSGERGLPGAQGPAGLKGGEGPQGPPGPIGSSGERGAAGAAGPIGLPGRPG
PQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPQGPPGEDGDKGEIGEPGQKG
GKGDKGEQGPPGPAGLQGPVGAPGPAGSDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIG
LQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSIGSPGAVGEKGEPG
EAGNPGPPGEAGVSGPKGERGEKGEAGPSGAAGPAGPKGPPGDDGPKGNPGPVGFPGDPG
PPGEPGPGGADGLSGDKGEDGDSGQPGPPGPSGEAGPPGPPGKRGPPGSPGTEGRQGEKG
AKGESGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGASGQDGPPGPMGPPG
LPGLKGDPGTKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGTPGSKGDGGVSGPSGPNG
PPGAPGLPGPQGPKGSKGSGGPSGQKGDGGMPGPPGPPGPPGEVIQPLPIQSPRKTRRSP
EGMMADAVDNILDYDGMDEIFVSLNSLKQDIERMKYPEGSQNNPARTCKDLQLSHPEFLD
GEYWIDPNQGCSGDSFKVYCNFTAGGETCIYADKKSEAVRISSWPKENPGSWFSEFKRGK
LLSYVDVEGNSINQVQMTFLRLLSSSARQNFTYSCHQSVAWHDAVNNNYDKALRFLGSND
EEISYDNSPFIAALHDGCALRKGYARTVLEINTLKIDQLPIADVMISDFGDQNQKFGFEV
GPACFLG
NT seq
5604 nt
NT seq
+upstream
nt +downstream
nt
atggagaggtggaacacaaggtggaaaacgaaaaggaggttgtgggattcctctcttagc
tccctaattctcatcactttgactttccttctccaagctgcagaggtcagaggagctgga
ccagtcgatgtacttagagcattagattttcacaatacaccagaaggtgtgtcaaaaaca
gcagggttttgcacaaacagaaaggcatccaagggatcagacacagcatacaaagttcat
aaaaatgcccagcttagtgtaccaatgaaccaattatacccagggggggtatttccaaag
gatttctcaatcctgctgacagtaaagcccaagaaaggcctgcagtcatttatcctgtca
atatacagtggggaaggaacacagcagataggcgttgaggttggcaggtctcctgtcttc
ctttatgaagatcagaatcgactaccctcaccagaagactatcccatttttagcactgtc
aatgttgcagatggaaagtggcaccggattgcaatcagtgtggaaaagaagaccatcaca
atgattgtggactgcaaaaaaaagatatccaaacccttaccgagaagtgaccgtcctgtg
gtggataccaatggcattgctgtatttgggactcgcatcctggaagaggaagtttttcag
ggggacatccagcagcttctgattattgatgaccccaaagctgcgtatgactactgtgaa
cattacatgacggactgtgacaagccagcacaccttttgccccaagctcaggacccccaa
gtggatgagtatgcacctgatgagcaagtcgattatgactatatgtatggggaaacagat
tacaaggagactgattatgtaacagtggcaccctcaataactgaagaatatgtagctcag
actgagaagaagaaagccaattccaaaacgaagaagaagccagtgccccctaagtcaaag
gacaaacccccaaaggtcacgcccaaaaactcatttgcagctaagaagaagaagggcaag
accgattaccaagcatcaacaagaaaaagaataggggctaatgtagttgactacattcca
gaacagtatggtgaagtggactatggttaccagacagacacacctgctcttactactgga
ctcaatgagaaaacccctgtggatgagacactggtggaggaaacctttgtggatgagcct
tttctggaggagtacgtaactggcgaggattatgactcagagaaaaagctggttgaggaa
acagactatggggtgaaagcagtagaccctacaccaactgagccggtggtggtaggagat
ttagaaaaagatttatatgattatacagactatgaagagaaagaaacaaatcctaccaga
gaagagtttggacctggggttgctgccgaaacagatgtttcagagaccaacgtaaataac
tatggaggatatggcgagaagggccagaagggagaacgagctgttattgaaccaggaatg
cttattgaaggacccccaggactggaaggaccagcaggtcttactggtccccctggcttg
caaggcccatctggtccatctggagaccctggtgagagaggtccacctggtcgtcctgga
ttacctggtgctgatggattagctggacctccaggcactatgctgatgttgccgttccgg
tattccagtgatggcgaaaaaggaccacctgtctcagcacaagaagcacaagctcaggct
atccttcagcaagctcgtattgccatgagggggcctccaggtccaatgggtctcacagga
agatctggcccagtggggtctccgggcgctacaggcattaaaggagagtcaggagactca
ggcccccagggccccagaggaattcagggatcacctggttcaatgggaaaagctggtaaa
agaggacgtcctggagctgatggagcacgtggaatgcctggagaacctggttcaaagggt
gacagaggttttgacggtcttccaggtcttcccggtgagaaaggtcacaggggggataaa
ggtcctctaggcccacctggcccacctggtgaagatggagacaggggagaagatggagag
gttggacccagagggctgcccggtgaacctggtgagcgaggattgttgggtccaagaggt
tcccctggccctccaggacaacatggtgttgctggtgtagatggacccccaggacctaaa
ggtaacttgggccctcaaggagaacctggcccagctggtcaacaaggaattccaggaaca
cagggtcttcctggtccccaaggccccatcggtccccctggcgataagggtcctcatgga
aagcctggtctgcctggattacctggatctgatggacccccaggtcaccccggaaaggaa
ggaccaccaggtgaaaagggagctgggggtcccaatggtccccaaggtcctattggttat
cctggacctcgtggtgtcaagggtgctgatggtgtaagaggcttgaagggaggcaaagga
gaaaagggtgaagatggattcccaggatttaagggtgatatgggattaaagggagacagg
ggagaagtaggcccattaggtccaagaggagaagatggtcctgaaggtccaaagggaaga
tctggtccaaatggagatcttggttcagctggtccagctggtgaaaagggcaagcttggt
gttcccggtttgcctggatacccaggccgacagggtccaaagggatcaacaggattccca
ggatttgcaggagccaatggggaaaaaggagctcggggtgttgctggaaaaccaggtcca
aggggacaacgaggtccaacgggtccacggggcgctagaggtccaaggggtcctactgga
aaaccaggtgctaagggcacatcaggaaatgatggtcctcccggcccacctggtgaaaga
ggacctcaaggaccacagggccctgctggcttctcaggaccgaagggcccccctgggcct
cctggaaaggatgggttgcccggccaccctggacagcgtggtgaaactggtttccaagga
aaaactggtccaccaggtcctggaggtgttgtaggtccacagggtccaactggagaaact
ggtcctattggtgagagaggtcatcctggacctcctggcccacctggagagcaagggtta
cctggatcagctggaaaagagggtgcaaagggagaccctggtcctcaaggggtctctggt
aaagatggtccggcaggccttcgtggattctctggagagagaggtcttcctggagcacag
ggtcctgcaggattaaaaggtggagaaggtccacagggtccacctggtccaattggttct
agtggagaaagaggagctgcaggtgctgctggaccaattggtttacctggaagacctggt
cctcagggcccaccaggaccagcaggagagaagggagctcctggagaaaaaggaccccag
ggaccagctggccgagatggagtacaaggacctgtgggtctcccaggacctgccggccct
cagggaccacctggtgaagacggtgacaagggtgaaataggagagcctggccagaaagga
ggaaaaggagacaaaggagaacagggtccaccaggaccagccggtcttcagggtccagtc
ggagctcccggtccagctggatcagatggagaacctggaccaagaggtcagcaaggaatg
tttgggcagaagggggatgaaggcgctcgtggtttcccaggtccccctggtccaattggt
ctgcagggtcttcctggacctccaggtgaaaagggagaaaacggtgatgttggaccaatg
ggtccacctggcccccctggtcccagaggccctcaaggtcctaatggtgcagacggtcca
caaggtcctcctgggtcaattggttctcctggagcagttggtgagaagggtgaacctgga
gaggctggaaacccaggaccccctggtgaagccggtgtttctggtcctaaaggtgaaaga
ggagagaagggagaagctggaccatccggagcagctggaccagctggtcctaaaggccca
ccaggagacgatggaccaaaaggaaatcctggtcctgttggattccctggagatcccggt
cctcctggagaacctggtcctggtggtgcagatggcctttctggtgacaagggtgaagat
ggtgattcaggtcaacctggccctcctggtccatctggagaagctggtccacctggtcct
cctggcaagagaggtcctcctggatctcctggcacagagggaagacaaggagaaaagggt
gcaaagggtgaatctggagcagaaggacctcctgggaagacaggacctgttggacctcag
ggccctgcaggaaaaccaggaccagaaggtttaagaggaattccaggacctgtgggtgaa
caaggtcttccaggtgcttctggtcaggacggacctccaggcccaatgggacctcccgga
cttccaggtctgaaaggtgaccccggcaccaagggagaaaagggacatcctggtttgatt
ggtctgataggtccccctggagaacagggtgagaagggagacagaggacttccaggtcca
cagggaactcccggatccaagggtgatggaggtgtcagtggtccttctggtccaaatggt
cctcctggtgctcctgggttacctggtcctcaaggtcctaaaggttcaaagggttcaggt
ggtccttcaggtcagaagggagatggcggtatgcctggacctcctggaccaccaggacca
ccaggagaggtcatccagccactgcctatccaatcaccaaggaagacccgaagatctcct
gaaggcatgatggcagatgcagtagacaatattttggattatgatggaatggatgagata
tttgtttccctaaattctctgaaacaagacatagagcgcatgaaatatccagaaggatcc
cagaacaatcctgctagaacatgcaaagatctccagctctctcacccagagttccttgat
ggtgaatattggatcgatccaaaccagggctgctctggagactcattcaaagtgtactgc
aacttcacagccggaggggagacctgtatctatgcagacaagaagtccgaagcagtacga
atttcatcctggccaaaagaaaaccctggttcctggttcagtgaattcaaaagaggaaaa
ctgctttcttatgtggatgttgaaggcaacagcattaaccaagttcaaatgacattcctg
agacttctcagctcctcagcccgccagaactttacatacagctgtcaccaatcagtggct
tggcatgatgctgttaacaacaactatgacaaggccctgcggttcctgggttcaaatgat
gaggaaatttcatacgacaacagtcccttcattgcagccctgcatgatggatgtgcgctg
aggaaaggatatgcacgaacagtcctagaaatcaacaccctgaaaatagatcaattgcct
atagcagatgttatgatcagtgactttggggatcagaatcagaagtttggatttgaggtt
ggcccagcctgcttcttaggttga
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integrated database retrieval system