KEGG   Nanorana parkeri (Xizang Plateau frog): 108788524
Entry
108788524         CDS       T04897                                 
Symbol
COL11A1
Name
(RefSeq) collagen alpha-1(XI) chain isoform X1
  KO
K19721  collagen type V/XI/XXIV/XXVII, alpha
Organism
npr  Nanorana parkeri (Xizang Plateau frog)
Pathway
npr04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:npr00001]
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    108788524 (COL11A1)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:npr00536]
    108788524 (COL11A1)
Glycosaminoglycan binding proteins [BR:npr00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   108788524 (COL11A1)
SSDB
Motif
Pfam: Collagen COLFI Laminin_G_2 Laminin_G_3 Laminin_G_1
Other DBs
NCBI-GeneID: 108788524
NCBI-ProteinID: XP_018413799
LinkDB
Position
Unknown
AA seq 1867 aa
MERWNTRWKTKRRLWDSSLSSLILITLTFLLQAAEVRGAGPVDVLRALDFHNTPEGVSKT
AGFCTNRKASKGSDTAYKVHKNAQLSVPMNQLYPGGVFPKDFSILLTVKPKKGLQSFILS
IYSGEGTQQIGVEVGRSPVFLYEDQNRLPSPEDYPIFSTVNVADGKWHRIAISVEKKTIT
MIVDCKKKISKPLPRSDRPVVDTNGIAVFGTRILEEEVFQGDIQQLLIIDDPKAAYDYCE
HYMTDCDKPAHLLPQAQDPQVDEYAPDEQVDYDYMYGETDYKETDYVTVAPSITEEYVAQ
TEKKKANSKTKKKPVPPKSKDKPPKVTPKNSFAAKKKKGKTDYQASTRKRIGANVVDYIP
EQYGEVDYGYQTDTPALTTGLNEKTPVDETLVEETFVDEPFLEEYVTGEDYDSEKKLVEE
TDYGVKAVDPTPTEPVVVGDLEKDLYDYTDYEEKETNPTREEFGPGVAAETDVSETNVNN
YGGYGEKGQKGERAVIEPGMLIEGPPGLEGPAGLTGPPGLQGPSGPSGDPGERGPPGRPG
LPGADGLAGPPGTMLMLPFRYSSDGEKGPPVSAQEAQAQAILQQARIAMRGPPGPMGLTG
RSGPVGSPGATGIKGESGDSGPQGPRGIQGSPGSMGKAGKRGRPGADGARGMPGEPGSKG
DRGFDGLPGLPGEKGHRGDKGPLGPPGPPGEDGDRGEDGEVGPRGLPGEPGERGLLGPRG
SPGPPGQHGVAGVDGPPGPKGNLGPQGEPGPAGQQGIPGTQGLPGPQGPIGPPGDKGPHG
KPGLPGLPGSDGPPGHPGKEGPPGEKGAGGPNGPQGPIGYPGPRGVKGADGVRGLKGGKG
EKGEDGFPGFKGDMGLKGDRGEVGPLGPRGEDGPEGPKGRSGPNGDLGSAGPAGEKGKLG
VPGLPGYPGRQGPKGSTGFPGFAGANGEKGARGVAGKPGPRGQRGPTGPRGARGPRGPTG
KPGAKGTSGNDGPPGPPGERGPQGPQGPAGFSGPKGPPGPPGKDGLPGHPGQRGETGFQG
KTGPPGPGGVVGPQGPTGETGPIGERGHPGPPGPPGEQGLPGSAGKEGAKGDPGPQGVSG
KDGPAGLRGFSGERGLPGAQGPAGLKGGEGPQGPPGPIGSSGERGAAGAAGPIGLPGRPG
PQGPPGPAGEKGAPGEKGPQGPAGRDGVQGPVGLPGPAGPQGPPGEDGDKGEIGEPGQKG
GKGDKGEQGPPGPAGLQGPVGAPGPAGSDGEPGPRGQQGMFGQKGDEGARGFPGPPGPIG
LQGLPGPPGEKGENGDVGPMGPPGPPGPRGPQGPNGADGPQGPPGSIGSPGAVGEKGEPG
EAGNPGPPGEAGVSGPKGERGEKGEAGPSGAAGPAGPKGPPGDDGPKGNPGPVGFPGDPG
PPGEPGPGGADGLSGDKGEDGDSGQPGPPGPSGEAGPPGPPGKRGPPGSPGTEGRQGEKG
AKGESGAEGPPGKTGPVGPQGPAGKPGPEGLRGIPGPVGEQGLPGASGQDGPPGPMGPPG
LPGLKGDPGTKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGTPGSKGDGGVSGPSGPNG
PPGAPGLPGPQGPKGSKGSGGPSGQKGDGGMPGPPGPPGPPGEVIQPLPIQSPRKTRRSP
EGMMADAVDNILDYDGMDEIFVSLNSLKQDIERMKYPEGSQNNPARTCKDLQLSHPEFLD
GEYWIDPNQGCSGDSFKVYCNFTAGGETCIYADKKSEAVRISSWPKENPGSWFSEFKRGK
LLSYVDVEGNSINQVQMTFLRLLSSSARQNFTYSCHQSVAWHDAVNNNYDKALRFLGSND
EEISYDNSPFIAALHDGCALRKGYARTVLEINTLKIDQLPIADVMISDFGDQNQKFGFEV
GPACFLG
NT seq 5604 nt   +upstreamnt  +downstreamnt
atggagaggtggaacacaaggtggaaaacgaaaaggaggttgtgggattcctctcttagc
tccctaattctcatcactttgactttccttctccaagctgcagaggtcagaggagctgga
ccagtcgatgtacttagagcattagattttcacaatacaccagaaggtgtgtcaaaaaca
gcagggttttgcacaaacagaaaggcatccaagggatcagacacagcatacaaagttcat
aaaaatgcccagcttagtgtaccaatgaaccaattatacccagggggggtatttccaaag
gatttctcaatcctgctgacagtaaagcccaagaaaggcctgcagtcatttatcctgtca
atatacagtggggaaggaacacagcagataggcgttgaggttggcaggtctcctgtcttc
ctttatgaagatcagaatcgactaccctcaccagaagactatcccatttttagcactgtc
aatgttgcagatggaaagtggcaccggattgcaatcagtgtggaaaagaagaccatcaca
atgattgtggactgcaaaaaaaagatatccaaacccttaccgagaagtgaccgtcctgtg
gtggataccaatggcattgctgtatttgggactcgcatcctggaagaggaagtttttcag
ggggacatccagcagcttctgattattgatgaccccaaagctgcgtatgactactgtgaa
cattacatgacggactgtgacaagccagcacaccttttgccccaagctcaggacccccaa
gtggatgagtatgcacctgatgagcaagtcgattatgactatatgtatggggaaacagat
tacaaggagactgattatgtaacagtggcaccctcaataactgaagaatatgtagctcag
actgagaagaagaaagccaattccaaaacgaagaagaagccagtgccccctaagtcaaag
gacaaacccccaaaggtcacgcccaaaaactcatttgcagctaagaagaagaagggcaag
accgattaccaagcatcaacaagaaaaagaataggggctaatgtagttgactacattcca
gaacagtatggtgaagtggactatggttaccagacagacacacctgctcttactactgga
ctcaatgagaaaacccctgtggatgagacactggtggaggaaacctttgtggatgagcct
tttctggaggagtacgtaactggcgaggattatgactcagagaaaaagctggttgaggaa
acagactatggggtgaaagcagtagaccctacaccaactgagccggtggtggtaggagat
ttagaaaaagatttatatgattatacagactatgaagagaaagaaacaaatcctaccaga
gaagagtttggacctggggttgctgccgaaacagatgtttcagagaccaacgtaaataac
tatggaggatatggcgagaagggccagaagggagaacgagctgttattgaaccaggaatg
cttattgaaggacccccaggactggaaggaccagcaggtcttactggtccccctggcttg
caaggcccatctggtccatctggagaccctggtgagagaggtccacctggtcgtcctgga
ttacctggtgctgatggattagctggacctccaggcactatgctgatgttgccgttccgg
tattccagtgatggcgaaaaaggaccacctgtctcagcacaagaagcacaagctcaggct
atccttcagcaagctcgtattgccatgagggggcctccaggtccaatgggtctcacagga
agatctggcccagtggggtctccgggcgctacaggcattaaaggagagtcaggagactca
ggcccccagggccccagaggaattcagggatcacctggttcaatgggaaaagctggtaaa
agaggacgtcctggagctgatggagcacgtggaatgcctggagaacctggttcaaagggt
gacagaggttttgacggtcttccaggtcttcccggtgagaaaggtcacaggggggataaa
ggtcctctaggcccacctggcccacctggtgaagatggagacaggggagaagatggagag
gttggacccagagggctgcccggtgaacctggtgagcgaggattgttgggtccaagaggt
tcccctggccctccaggacaacatggtgttgctggtgtagatggacccccaggacctaaa
ggtaacttgggccctcaaggagaacctggcccagctggtcaacaaggaattccaggaaca
cagggtcttcctggtccccaaggccccatcggtccccctggcgataagggtcctcatgga
aagcctggtctgcctggattacctggatctgatggacccccaggtcaccccggaaaggaa
ggaccaccaggtgaaaagggagctgggggtcccaatggtccccaaggtcctattggttat
cctggacctcgtggtgtcaagggtgctgatggtgtaagaggcttgaagggaggcaaagga
gaaaagggtgaagatggattcccaggatttaagggtgatatgggattaaagggagacagg
ggagaagtaggcccattaggtccaagaggagaagatggtcctgaaggtccaaagggaaga
tctggtccaaatggagatcttggttcagctggtccagctggtgaaaagggcaagcttggt
gttcccggtttgcctggatacccaggccgacagggtccaaagggatcaacaggattccca
ggatttgcaggagccaatggggaaaaaggagctcggggtgttgctggaaaaccaggtcca
aggggacaacgaggtccaacgggtccacggggcgctagaggtccaaggggtcctactgga
aaaccaggtgctaagggcacatcaggaaatgatggtcctcccggcccacctggtgaaaga
ggacctcaaggaccacagggccctgctggcttctcaggaccgaagggcccccctgggcct
cctggaaaggatgggttgcccggccaccctggacagcgtggtgaaactggtttccaagga
aaaactggtccaccaggtcctggaggtgttgtaggtccacagggtccaactggagaaact
ggtcctattggtgagagaggtcatcctggacctcctggcccacctggagagcaagggtta
cctggatcagctggaaaagagggtgcaaagggagaccctggtcctcaaggggtctctggt
aaagatggtccggcaggccttcgtggattctctggagagagaggtcttcctggagcacag
ggtcctgcaggattaaaaggtggagaaggtccacagggtccacctggtccaattggttct
agtggagaaagaggagctgcaggtgctgctggaccaattggtttacctggaagacctggt
cctcagggcccaccaggaccagcaggagagaagggagctcctggagaaaaaggaccccag
ggaccagctggccgagatggagtacaaggacctgtgggtctcccaggacctgccggccct
cagggaccacctggtgaagacggtgacaagggtgaaataggagagcctggccagaaagga
ggaaaaggagacaaaggagaacagggtccaccaggaccagccggtcttcagggtccagtc
ggagctcccggtccagctggatcagatggagaacctggaccaagaggtcagcaaggaatg
tttgggcagaagggggatgaaggcgctcgtggtttcccaggtccccctggtccaattggt
ctgcagggtcttcctggacctccaggtgaaaagggagaaaacggtgatgttggaccaatg
ggtccacctggcccccctggtcccagaggccctcaaggtcctaatggtgcagacggtcca
caaggtcctcctgggtcaattggttctcctggagcagttggtgagaagggtgaacctgga
gaggctggaaacccaggaccccctggtgaagccggtgtttctggtcctaaaggtgaaaga
ggagagaagggagaagctggaccatccggagcagctggaccagctggtcctaaaggccca
ccaggagacgatggaccaaaaggaaatcctggtcctgttggattccctggagatcccggt
cctcctggagaacctggtcctggtggtgcagatggcctttctggtgacaagggtgaagat
ggtgattcaggtcaacctggccctcctggtccatctggagaagctggtccacctggtcct
cctggcaagagaggtcctcctggatctcctggcacagagggaagacaaggagaaaagggt
gcaaagggtgaatctggagcagaaggacctcctgggaagacaggacctgttggacctcag
ggccctgcaggaaaaccaggaccagaaggtttaagaggaattccaggacctgtgggtgaa
caaggtcttccaggtgcttctggtcaggacggacctccaggcccaatgggacctcccgga
cttccaggtctgaaaggtgaccccggcaccaagggagaaaagggacatcctggtttgatt
ggtctgataggtccccctggagaacagggtgagaagggagacagaggacttccaggtcca
cagggaactcccggatccaagggtgatggaggtgtcagtggtccttctggtccaaatggt
cctcctggtgctcctgggttacctggtcctcaaggtcctaaaggttcaaagggttcaggt
ggtccttcaggtcagaagggagatggcggtatgcctggacctcctggaccaccaggacca
ccaggagaggtcatccagccactgcctatccaatcaccaaggaagacccgaagatctcct
gaaggcatgatggcagatgcagtagacaatattttggattatgatggaatggatgagata
tttgtttccctaaattctctgaaacaagacatagagcgcatgaaatatccagaaggatcc
cagaacaatcctgctagaacatgcaaagatctccagctctctcacccagagttccttgat
ggtgaatattggatcgatccaaaccagggctgctctggagactcattcaaagtgtactgc
aacttcacagccggaggggagacctgtatctatgcagacaagaagtccgaagcagtacga
atttcatcctggccaaaagaaaaccctggttcctggttcagtgaattcaaaagaggaaaa
ctgctttcttatgtggatgttgaaggcaacagcattaaccaagttcaaatgacattcctg
agacttctcagctcctcagcccgccagaactttacatacagctgtcaccaatcagtggct
tggcatgatgctgttaacaacaactatgacaaggccctgcggttcctgggttcaaatgat
gaggaaatttcatacgacaacagtcccttcattgcagccctgcatgatggatgtgcgctg
aggaaaggatatgcacgaacagtcctagaaatcaacaccctgaaaatagatcaattgcct
atagcagatgttatgatcagtgactttggggatcagaatcagaagtttggatttgaggtt
ggcccagcctgcttcttaggttga

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