Nanorana parkeri (Xizang Plateau frog): 108789516
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Entry
108789516 CDS
T04897
Symbol
COL9A3
Name
(RefSeq) collagen alpha-3(IX) chain
KO
K08131
collagen type IX alpha
Organism
npr
Nanorana parkeri (Xizang Plateau frog)
Pathway
npr04510
Focal adhesion
npr04512
ECM-receptor interaction
npr04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
npr00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108789516 (COL9A3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108789516 (COL9A3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
108789516 (COL9A3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
npr00535
]
108789516 (COL9A3)
Proteoglycans [BR:
npr00535
]
Extracellular matrix (ECM) proteoglycans
Others
108789516 (COL9A3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
108789516
NCBI-ProteinID:
XP_018415056
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All DBs
Position
Unknown
AA seq
676 aa
AA seq
DB search
MVWFPALGFLLLVHLVAPQAPRAGPPGPPGPPGPSGIPGKDGIDGEVGPAGLPGPAGPKG
APGKPGEAGKAGLSGLPGIDGLTGPDGKAGPDGPPGGRGDIGPPGPDGPPGRGPTGPPGL
AGPSGLPGGKGPQGPSGPAGQPGLPGPPGPPGPPGLPGVVPDSNGDLQCPAVCPPGPPGP
PGMPGFKGHTGHKGDIGESGKDGQKGDPGPPGPAGIPGSVGLQGPRGGRGLVGPQGPGGD
RGDTGFRGPSGAPGPPGKAGDQGVRGPQGYQGPKGDTGKPGPKGMPGGLGPIGEPGMLGK
DGRDGTSGLDGAKGDQGRPGVPGEKGPNGLPGLGGKAGTKGEKGQLGSNGELGEAGPSGE
PGIPGEAGPPGERGEAGPRGVAGGIGLQGPIGVAGVRGFQGPKGNIGDPGLPGPTGIRGG
FGERGPVGASGPKGSEGIAGSDGLPGEKGEMGPFGPVGQKGEPGVRGELGPKGISGPNGT
AGVLGVPGPPGPMGFQGEQGVPGLTGKSGVPGKLASEQQIRELCGGMISDQIAQLAANLR
RPLAPGAVGRPGPPGPPGPQGEIGRVGHPGARGPPGYSGPTGELGDPGSRGLSGDKGDKG
AVGRGIDGPPGDQGEQGALGALGISIDGRDGSYGEPGYPGESGRPGAIGAHGTPGICDTS
ACQGAMAAEKSGSRKS
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atggtctggttcccagctcttgggttcctcttattggtccacttggtggcccctcaggcg
ccgagagcgggacctccaggaccacccggcccacctggaccttctggaataccaggcaag
gatggaatagatggtgaagtcggacccgctggtttacctggacccgcaggtccaaaaggt
gccccaggaaaaccaggagaagctggaaaagctggcttgtctgggcttccaggaattgat
ggactcaccggacctgatgggaaggctggacctgatggacctccaggaggaagaggggat
attggaccacctggaccagatggacccccaggaagaggaccaactggacctcctggtcta
gctggaccgagtggcttaccaggcggtaaaggaccccagggaccatcgggacctgcaggt
caacctggccttcctggccccccaggcccaccaggccctccgggtcttccaggagttgtt
cccgacagcaacggagatttgcagtgtccggctgtttgcccacctggcccacccggtccc
cctggcatgccaggatttaagggtcacacagggcacaaaggagatataggggagtctgga
aaggatggacagaagggagacccaggaccaccgggaccagcaggaatccctggcagtgtg
ggcttacagggcccaagaggtggaaggggcttagtcggaccccagggaccaggaggagac
aggggagacaccggatttaggggaccctccggcgctccaggaccacctgggaaagctggg
gatcaaggtgtgagggggccccagggataccaagggccaaagggagacacgggcaaacca
ggacctaaagggatgcctggaggtctgggccctataggagaaccgggaatgcttggaaag
gatggacgagatgggacctctggcctggacggtgcgaagggtgatcaaggacggccagga
gttcctggagagaagggaccaaatgggctacctgggcttgggggtaaagctggaacaaag
ggagaaaaaggtcagctgggcagcaatggagagctgggagaagctggaccctctggagag
ccaggtattcccggtgaagccggccccccaggagagagaggagaagccggccccagagga
gtggctggtggaattggattacaaggacccattggagttgccggagtgagaggcttccag
ggtccaaaaggcaacattggtgaccctggcttaccaggacctactggcatccgtggtgga
tttggtgagcggggtccagtaggagcttcgggacccaaaggaagcgagggtatcgctggc
tctgatggacttccaggagagaagggagaaatgggaccgtttggaccagttggacagaag
ggagagccaggagtgagaggtgaactaggtcctaagggtatttctgggcccaacggcaca
gctggagtactaggcgttcccggcccaccaggaccaatgggattccaaggagaacaaggc
gttccaggattaaccgggaaatctggagtccctggcaagctggccagcgagcagcaaatt
cgggagttgtgcggtggaatgattagcgatcaaattgcacagctagctgctaatctcaga
aggcctttggctccaggagcagttggtcggccaggtcctcctgggccacctggacctcaa
ggtgaaattggacgtgtaggacatcctggtgctcgtggaccacctggatatagtgggcca
accggagaactgggtgatcccggttctagaggtttgtcaggcgacaaaggcgacaaagga
gcagttggacgaggcatcgatggtccacctggtgatcaaggagaacaaggtgccctagga
gcccttggcataagtatagacggccgggacggttcctacggcgagcccggttaccctgga
gagtctggaagacccggtgcgataggagcccatggtaccccgggaatatgcgacacctcc
gcttgtcaaggtgccatggctgcagaaaaatcgggttccaggaagtcataa
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