Nanorana parkeri (Xizang Plateau frog): 108791362 Help Entry 108791362         CDS       T04897                                  Symbol COL27A1 Name (RefSeq) collagen alpha-1(XXVII) chain   KO K19721   collagen type V/XI/XXIV/XXVII, alpha Organism npr  Nanorana parkeri (Xizang Plateau frog) Pathway npr04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:npr00001]  09140 Cellular Processes   09142 Cell motility    04820 Cytoskeleton in muscle cells     108791362 (COL27A1)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:npr00536]     108791362 (COL27A1) Glycosaminoglycan binding proteins [BR:npr00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    108791362 (COL27A1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Collagen COLFI Laminin_G_2 Laminin_G_3 GH131_N Laminin_G_1 Motif Other DBs NCBI-GeneID:  108791362 NCBI-ProteinID:  XP_018417335 LinkDB All DBs Position Unknown AA seq 1705 aa AA seqDB search MEPVSAPGSRLRAAASRGRSLFVWIILYISCCLDISQGAAEDVDVLQKLGLMRSKPSSRP VPEGVIPFKSGVILTQRARAEAPVHAIIPPSLGTDLTLVLSLCSHRINNAFLFAVRSKKK KLELGLQFIPGKIIVYVGHKQSVYFDYNVHDGQWHNMAVDIQGQKVTLYTSCGKQSINAS LHIKKDDTLDSDGVFMLGKFSQQTIQFEGAICQFDIYPPAKAAHNYCKYLKKQCRQVDTY RPNLPPLIPLMPLEARLSLSTEIILKSLGNFTTASPQSVKTNLTTNSKVRTPSVKLTTKA PALSSVTSPAPHRIHTQLLSSVSTRTSTVALRISPASAVLLGQPPPAITKHSALPSQNST KKPQQEKVTKKVVYQKTTIKPLASSSSSKQVKKSTGSPRSTNTTTPKQAVEKRTSAPSQK NQTSMNLNVQPTTSSLLYTKPASGTIYSSTSTITSLPFTHDYLWLDPTAFPYLMGPPGPK GDEGAPGPPGPAGLPGPPGKRGPRGPLGPHGNPGPPGYSGSKGQKGDPGISPGKALNGLK GDPGLAGLTGLPGPLGRKGQKGYPGPQGHPGEPGERGPDGSPGAKGYPGRQGLPGPVGAL GLKGTRGYIGPPGLFGLPGADGERGLPGVPGKRGTMGRPGFPGDFGERGPPGLDGNPGEL GPPGPPGVPGFIGDMGTIGVIGFMGPKGLKGVPGNPGESGLKGDKGIQGLPGIPGEVGFQ GDKGSQGLPGPPGPRGKTGPVGKPGDKGLVGLPGPPGPEGFPGDIGPPGQNGPEGLKGKP GARGFPGPRGQPGLDGDEGPIGPPGFPGPEGYPGRKGFPGIPGAEGSKGEPGNTGRAGKI GEQGAPGFIGPVGEPGIPGEKGDRGSIGAPGPPGEKGSMGHTGNPGPRGPPGPPGPPGLP GSRGSPGVRGPKGRRGARGPDGPTGGPGLPGTKGPHGVQGKEGLVGQQGKMGERGTVGPR GFPGIPGPSGPSGEKGIPGNPGPSGPQGPVGAMGEIGHKGPPGAKGEPGPPGEPGMKGDI GPLGIPGEQGLIGQRGEIGLEGDSGMMGPDGLKGEKGEPGPEGEKGERGAVGLVGKDGPP GLSGLPGVRGMEGKPGKQGEKGKPGRKGNKGFQGHLGETGSPGKPGPTGNQGPKGSRGTL GPVGSPGRMGAQGEPGIPGYQGHTGPTGPIGPPGVKGEKGEQGEDGKMEGAPGPPGDRGP VGDRGDRGESGDPGYPGQEGPEGPRGKPGQQGLPGHAGSAGFQGLKGSKGAVGMKGKQGK PGETGARGPLGAAGVTGPRGVVGRQGQEGPPGPDGIPGKDGSMGMQGEQGDDGEIGSDGM SGKRGNTGVPGLHGAQGPIGLRGERGLPGEVGVPGKRGNEGIMGLPGAKGEPGTKGKPGD PGETGFPGIAGLFGPKGPPGDIGYKGIQGPKGPPGLMGNEGVIGPMGIVGPTGNPGPIGD RGTQGDMGLPGPRGPTGPRGKPGPPGPPVFLESFRTEDISENYQALMDSNGPSYRSTEFI LVDHGGEMFKTLHYLSSLIQSIKNPLGTRDNPARVCRDLMNCQQKMGDGTYWIDPNVGCS SDTIEVTCNFTQGGQTCLRSLTTSKLVFDIGRVQMNFLHLLSSEAVQHITLHCLNVPVWG ISSDKVSQKPLRFKAWNGQIFEAGGQYQPEVTLDDCRLQDGHWHQTIFTFRTQDPTQLPI VDVLNLPSSKPGKNLHLEVGSVCFL NT seq 5118 nt NT seq  +upstreamnt  +downstreamnt atggagccggtatcagccccgggctccagactcagagcagccgcgtctagggggagatcg ctctttgtttggataattctatatatttcctgttgcctggatatttctcagggagcagct gaagatgtggacgttcttcagaagctgggcctcatgcgaagcaagccatccagccgccca gttcccgaaggggtcataccatttaagtcgggagtcattttgacgcagagagcacgtgca gaagctcccgttcatgccatcatcccgcctagcttaggaacggatctcactttggtgctg agcctgtgctctcaccgcattaacaatgcattcttattcgcagtccgaagcaaaaagaaa aaacttgagctcgggttgcagttcatcccgggtaaaattatagtttatgtgggtcacaag cagtctgtatattttgattacaatgtccacgatggccagtggcacaatatggccgttgat attcaaggccaaaaggtgactctgtatacttcttgtgggaagcaaagtataaatgccagt ttgcatataaagaaagatgacacattggattctgatggggttttcatgctgggaaagttt agccagcaaacaatacaatttgaaggtgctatttgccagtttgatatttatcctccagcg aaggcagctcataattactgtaaatatcttaagaagcagtgcaggcaagtggatacctac cggccgaatctgccacctctgattccactgatgcccctagaagccaggttgtctctaagc acggagatcattttaaaatctctaggcaactttaccacagcttcccctcagtcagtcaaa acaaacttaacaaccaacagcaaggtcaggactccttctgtaaagttgactaccaaagct ccggccttgtcgtctgtgacatctccagcccctcacagaattcatactcagctcttatca agtgtctccaccaggacctccactgtcgcgctcaggatatctccagcctctgctgtttta ctgggacagcctccgccagccatcaccaaacacagcgcccttcccagccagaacagcaca aagaagccccagcaagaaaaagtgaccaagaaagttgtctaccaaaaaacaaccattaag cctctagcaagttcttcttcttccaagcaggtcaagaagagcacgggaagcccaaggagt acaaacaccaccactccaaagcaagcagtcgagaaaaggactagtgctccatcccagaag aatcaaacttccatgaacctcaatgtccagccaaccacatcctcactcctctataccaaa cctgcctccgggaccatttactcatctacatcaaccattaccagcctgccatttactcac gattacctgtggcttgacccaactgcttttccgtatttgatgggacctcctggacctaag ggagatgaaggtgcccccggcccgcctggtcctgcaggacttcctgggccacctggaaaa agaggtcctcggggtccccttggcccccatggaaatcccggcccacctggatattctgga tcaaagggtcaaaagggtgatcctggcatctctccaggaaaagctctaaatggattaaag ggagatcctggtttggctggtctgacaggccttcctgggcctctgggtcgaaagggacaa aagggttatcctggaccccaaggtcatcctggtgaaccgggagagcgtggaccggatgga agcccaggggccaaaggttatcctggcaggcagggattaccgggaccagtaggagctttg ggactgaagggaactcggggctatattggccctccgggattgtttggcctgcctggagcc gatggagaacgaggtttgcctggagttcccgggaagaggggcacgatgggtaggccggga ttccctggtgattttggagagaggggtcctccaggacttgatggaaaccctggtgaactg ggtcccccaggtcctcccggagtccctggattcattggtgacatgggcaccattggagtt ataggcttcatgggacctaaaggtttgaagggagtgccggggaacccaggagaatctgga ctgaaaggtgataagggcattcagggactcccagggatacccggtgaagtcggatttcaa ggtgataagggcagccagggtcttccaggcccaccaggaccacgtgggaagacaggacca gtgggtaaaccaggggataaaggtttggttggcttaccaggtccgccaggtccagagggt tttccaggtgacattgggccaccaggacaaaacgggccagaaggcttgaagggaaagcca ggagccagaggattcccagggcccagaggacaacctgggcttgacggagatgagggacca attgggccaccaggttttcctggcccggagggatatccaggccgaaagggattccccggt attcctggagcagaaggatcaaagggtgagccaggaaacacaggaagagctgggaagatc ggcgaacagggtgctccaggatttattggtcctgtgggggagccaggaattccgggtgag aagggtgaccgtggcagcattggggctccaggtccaccaggagaaaagggatcaatgggt catactggcaatccagggcctcggggtcctccaggtcctcctgggcctccgggtttgcct gggtcacgcgggtctccaggtgtacggggtccaaaaggccgaaggggtgccagaggccct gatggaccaacaggaggacctgggctcccaggtaccaagggacctcatggagtacagggc aaagaaggactggttggtcaacagggcaaaatgggagaaagaggaactgttggcccacgt ggctttccaggaattccaggaccatctggcccatctggggaaaaaggaattccagggaac ccagggccatctggacctcaaggacctgttggggcaatgggagaaattggacataaggga cctcccggggcaaagggagaaccaggaccaccaggtgaaccagggatgaagggagatatc ggaccattggggattccgggagaacaaggactgataggccagaggggtgaaatcggcctg gagggggacagtggtatgatgggcccagatggactaaagggggaaaagggtgaaccagga ccagaaggggagaaaggagaaaggggtgcagttggtttggtcggaaaagatggtccccca ggtctcagtggtctcccgggtgtgagaggaatggaaggaaaaccaggaaaacaaggagag aagggcaaaccaggacgtaagggaaacaaaggttttcaaggacaccttggggagacgggt tctccaggcaaaccaggacctacaggaaatcaaggaccaaagggaagcaggggaactctt ggaccagtgggatctccgggcaggatgggggcacagggagaaccaggaatacccggctat cagggacacacaggccccacaggacccatcgggcctcccggtgtaaaaggcgaaaaggga gaacagggggaggatggcaaaatggaaggtgcacccggtccccctggagatagaggtcct gttggtgatcgtggagacagaggggagtcgggagatcctggatatcctggccaagaagga cctgagggccccagaggaaaaccagggcaacaaggtttaccggggcatgctggatcagca ggttttcagggcttaaaaggatccaaaggcgctgtgggaatgaagggcaagcaaggaaaa ccaggggaaaccggagctcgagggccgctgggagctgcaggagtcactggtcctagagga gtggtaggaagacaaggccaagagggtcctcctggaccagatggaataccaggaaaagat ggcagcatggggatgcagggagaacaaggagatgatggggaaattggctctgatggcatg tctggaaagcgaggaaacactggggtgcctggtttacacggggctcagggacccatagga ctcaggggagaaaggggattacccggagaagttggggtgcctggaaaacgtggtaatgaa ggcatcatgggacttccaggagccaagggagagccaggaacaaaaggcaaacctggggac cctggagagactggattccctggcatagctggcctgtttggaccaaagggacctccgggt gacattggatataagggcattcagggaccgaaaggacctcctggcttgatgggtaatgag ggagtcataggaccaatggggattgtaggacccacaggaaacccagggcccattggagac aggggaacacaaggcgacatgggactacctggtcctaggggccctactggtcctcgcggc aagcctggaccacctggaccaccagtgtttctggaatcatttaggacagaagacattagt gaaaattaccaagcccttatggactccaatggaccgtcctatcggagtactgagttcatc ctggtggaccatggaggagagatgttcaagaccctacactacctcagtagcctcattcaa agtataaagaacccgctgggcacaagagacaatcctgcccgtgtttgccgtgatctgatg aattgccaacaaaaaatgggagatggcacttactggattgaccctaatgttggctgttcc tctgacacaattgaggtcacctgtaacttcacacaaggtggtcagacatgtctgagatct ctaactacatccaagttggtttttgacattggtcgagttcagatgaattttcttcacctc ctgagttcagaagcagtacagcacataactctccactgcctcaatgttcctgtgtgggga atatcctctgacaaagtctcccagaaacccttgcgcttcaaggcttggaacggacagata tttgaggcaggaggccagtatcagccagaggtcacactggatgattgcaggttacaagac gggcattggcatcaaaccatattcacgtttcggacacaggacccaactcagttaccaatc gttgacgtgttaaacctcccttcatccaagcctgggaagaaccttcatttagaagtgggg agtgtctgcttcttgtga

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