Nanorana parkeri (Xizang Plateau frog): 108792386
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Entry
108792386 CDS
T04897
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
npr
Nanorana parkeri (Xizang Plateau frog)
Pathway
npr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
npr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
108792386 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
npr03400
]
108792386 (LIG4)
Enzymes [BR:
npr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
108792386 (LIG4)
DNA repair and recombination proteins [BR:
npr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
108792386 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
BRCT_2
DNA_ligase_A_C
RNA_ligase
LIG3_BRCT
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
108792386
NCBI-ProteinID:
XP_018418656
LinkDB
All DBs
Position
Unknown
AA seq
911 aa
AA seq
DB search
MSASSSSNSVVKDTVASQVPFADLCSTLERIQKSKNRADKVNILKPFVDSWRKFHDALHK
NQPKTTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIKVLGLPKEGKDALKLLNYRTP
TSSNSDAGDFAAIAYFVLKSRCLKDGNLTIQDVNDQLDAIASNNAARKKELIEKSLLHLI
ANTTALEQKWLIRMIIKDMKLGFSQQTVFSIFHRDAAELHNVTTDLEKVCIQLHDPSVCL
SDVSISMFSAFKPMLAAIANIQRIEKQMNHRSFYIETKLDGERMQLHKDGDVYKYFSRNG
FDYTQQFGASPLEGSLTPFVHNLFCIDVQNCILDGEMMAYNPNTQTFMQKGNKFDIKRMV
DDSDLQTCYCVFDILMFNDQKLAHETLRKRNDILHKIFTPFTGRIHIVHKTEATTKKEVV
DALNEAIDNREEGIMVKDPMSIYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGKGQ
RGGMMSHFLCAVAETPASGEKPSVFHSVCRIGSGYTMKELYDLGLKLAPHWKRYSKRDPP
SSILCGTEKPEVYIQPGNSVILQVKAAEIVPSDMYKTNCTLRFPRIEKIREDKNWYECMT
VDDLEQFREKASGKLASKHLNINDEPQEKKRKTAPKIRKVIGVASHLKAPDLTNVTKQSN
MFEEVEFCVMSGTEEHSKADLESMIAACGGVVVQNPGQDTYCVIVGATNVRVKNIISSNK
HDVVRAAWLLECFESKTFVPWQPQHMIHMCPSTKEHFASEYDCYGDSYVTDTNENELKEL
FSRMPDNKEKIPLDMIADLEQRYSWEDTFHSIFRQCVVYVDMYATVNDPHTKLPTSSLTI
TALQLRFHGAKVVSRLDEGVSHVIVGDDKSRLTEMKAQRRTFQRKCKIVQVSWVLASLNM
GKLQMEQNYLL
NT seq
2736 nt
NT seq
+upstream
nt +downstream
nt
atgtctgcatctagctcctcaaattctgtggttaaggacactgtagcatcacaagtccca
tttgctgatctttgcagtacattggaaagaattcagaaatcaaagaaccgagctgataaa
gtaaatatactgaagccgtttgttgactcgtggagaaaatttcatgatgctctacataaa
aatcaacccaagacaacagactctttctacccagcaatgcgactcatcttgccacagctg
gaaagggagagaatggcatatggaattaaagagactatgcttgccaaactatacatcaaa
gttctgggcttgcctaaagaaggtaaggatgctttgaaacttttaaactatagaactcct
actagctcaaactctgacgctggagattttgctgcgatcgcttattttgttcttaagtca
cggtgcctaaaagatgggaatttgaccatacaggatgtcaatgatcagttggatgcaata
gcaagcaacaatgcagctagaaagaaagaactcatagagaaaagtcttctgcatttaatt
gctaatactactgccctagaacagaagtggcttataagaatgattattaaagacatgaaa
cttggctttagccagcaaactgtattttccatctttcaccgtgatgctgcagaacttcac
aatgtcaccacggatcttgagaaagtgtgtattcaactgcatgaccccagcgtatgtctc
agtgatgtctctatctcaatgttttctgctttcaaacccatgcttgctgctattgccaat
attcaaagaatagaaaaacagatgaaccaccggagcttttacattgaaactaaacttgat
ggggagagaatgcagttgcacaaagatggtgatgtgtacaaatacttttcccgaaatgga
tttgattacactcagcagtttggtgcctctccccttgaaggctccttgacaccatttgtt
cataacctgttttgtatcgatgtgcaaaattgcattttggacggagagatgatggcttac
aatccaaatactcagacatttatgcaaaaagggaacaaatttgatataaagagaatggtt
gatgattccgatctccaaacttgttactgtgtgtttgatatcttgatgtttaatgaccag
aaattggctcatgaaacacttagaaaaaggaatgacatccttcataaaatatttacccca
tttactggaagaattcacattgttcataaaacagaagctaccaccaaaaaagaagttgtg
gatgcactaaatgaagctattgataatcgcgaagaaggtatcatggtaaaagaccctatg
tccatttataagccagataaacgtggggaggggtggctgaaaattaaaccagagtatgtt
aatgggctaatggatgagttagatcttctaattgttggaggttactggggtaaaggtcag
cgaggtggcatgatgtctcatttcctctgtgccgtagctgaaaccccagcatctggagag
aagccatctgtttttcattctgtgtgtcgcataggctctggttacacaatgaaagagttg
tatgaccttggtttaaagttggctcctcactggaagcgttacagcaagagagatcctcct
tccagtattctatgtggaactgagaagcctgaggtctatatccagcctggtaattctgtc
attcttcaggtaaaggctgcagaaatagttcctagtgatatgtacaaaactaattgtact
ctccgttttcctcgaattgagaagatcagagaggacaagaattggtatgagtgtatgact
gttgatgacttggaacagtttagagaaaaggcttctggaaaattggcttcaaagcactta
aatataaatgatgaacctcaagagaaaaagcgaaaaacggctccaaaaattagaaaggtc
ataggagtggcttcacatctaaaagcaccagatcttactaacgtcacaaaacaatcaaac
atgtttgaagaagttgaattttgcgtaatgagcggaacagaagaacattcaaaggctgac
ctggagagcatgatcgctgcatgtggtggcgtagttgtgcaaaatcctgggcaagacacc
tattgcgtcattgttggagcaacaaatgtccgagtgaagaacatcatttcgtcaaataag
catgacgttgttagagcagcttggctcctggagtgttttgaaagcaaaacatttgtccct
tggcagcctcaacatatgattcatatgtgtccatccaccaaagagcactttgcctctgaa
tacgactgctatggcgacagctatgttacggatactaatgagaacgagctcaaggagctg
tttagcagaatgcctgacaacaaggaaaaaatccctctggacatgattgctgacctagaa
caacgttattcatgggaggacactttccacagtatatttcgccaatgcgttgtatatgta
gacatgtatgcaactgttaatgatccacacactaaacttccaacgtctagtttaactata
actgcactacagctgcgatttcatggcgctaaagtggtgagtcgccttgatgaaggagtt
tctcatgtaattgttggtgatgacaagtctcgattaacagagatgaaagctcagaggaga
acttttcaaagaaaatgtaaaattgttcaagtttcatgggttttggcttcattgaatatg
ggaaaactccagatggaacaaaattatttattgtaa
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integrated database retrieval system
