Nanorana parkeri (Xizang Plateau frog): 108796895
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Entry
108796895 CDS
T04897
Symbol
LIG1
Name
(RefSeq) DNA ligase 1
KO
K10747
DNA ligase 1 [EC:
6.5.1.1
6.5.1.6
6.5.1.7
]
Organism
npr
Nanorana parkeri (Xizang Plateau frog)
Pathway
npr03030
DNA replication
npr03410
Base excision repair
npr03420
Nucleotide excision repair
npr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
npr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
108796895 (LIG1)
03410 Base excision repair
108796895 (LIG1)
03420 Nucleotide excision repair
108796895 (LIG1)
03430 Mismatch repair
108796895 (LIG1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
npr03032
]
108796895 (LIG1)
03400 DNA repair and recombination proteins [BR:
npr03400
]
108796895 (LIG1)
Enzymes [BR:
npr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
108796895 (LIG1)
6.5.1.6 DNA ligase (ATP or NAD+)
108796895 (LIG1)
6.5.1.7 DNA ligase (ATP, ADP or GTP)
108796895 (LIG1)
DNA replication proteins [BR:
npr03032
]
Eukaryotic type
DNA Replication Elongation Factors
Other elongation factors
108796895 (LIG1)
Prokaryotic type
Elongation factors (archaeal)
Other elongation factors
108796895 (LIG1)
DNA repair and recombination proteins [BR:
npr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
108796895 (LIG1)
NER (nucleotide excision repair)
Other NER factors
108796895 (LIG1)
MMR (mismatch excision repair)
Other MMR factors
108796895 (LIG1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
mRNA_cap_enzyme
MELT_2
Motif
Other DBs
NCBI-GeneID:
108796895
NCBI-ProteinID:
XP_018423955
LinkDB
All DBs
Position
Unknown
AA seq
989 aa
AA seq
DB search
MQRSIKSFFQPKPGGAIKKEEKKKDHGSRKEKCTTTSKNGGEHPLKERNGTTLVSDSDSP
VKRIPKKITRVLDSDEEETMDFETTEPTKDNSEASQKEKPATPPVAVSGEGGNGDSSEKS
SNAASPDASVTASNIPKRKTARKQITKRKLENISEQDKQDQELNDKEATAKRQKKEADEG
LSPKNSESGKESEQCAMDTSPEKTKTPVNKSAVKSEPEEETGQCTTDSSPKKTEEKTGAS
PSSGNSKKGKGKSDKFFEKKGKKVSEKKTKNQSSEKESEDMSDKHSEEESKVSEKTSEKE
VSEKTTEKSSANTPAKPTKNISSFFGATKQDVADQQADYSPSKNSYHPVNDACWTNGQMV
PYLAVARTFEMIEDESARLKNIETLSNFLRSVICLSPGDLLPCIYLCLNRLGPAYEGLEL
GLGETILMKAIAQATGRQLDKIKAEAQEKGDLGLVAESSRSNQRTMFTPPKLTVLGVFNK
LKEIAKMTGNASMNKKIDVIKGLFVACRHSEARYIARSLGGKLRIGLAELSVLAAISQAV
CLTPPGQEFPPAVIDASKGMSTEAKKAWIEEHSLILKQTFCELPNYDAVIPALLKHGIKE
LPQHCHLTPGVPLKPMLAHPTKGVGEVLKRFEEAAFTSEYKYDGERAQIHILENGEVHVY
SRNQENNTSKYPDIIGRIPKVKKDSVKSCIIDSEAVAWDPQKKQIQPFQVLTTRKRKDVE
ASEIKVQVCVYAFDMLYLNGESLVREPFSRRRQLLRESFQEVEGEFMFATYMDTSNTDEI
SEFLDQSIKDSCEGLMVKTLEENATYEIAKRSHNWLKIKKDYLEGLGDTLDLVVIGAYLG
KGKRTGKYGGFLLASYDEESEEYQTICKIGTGFTDEDLETHYNFLKDHVIDGARSYYRWD
SSTQPDHWLEPVQVWEVKCADLSISPVHKAALGLVEDEKGISLRFPRFLRIRDDKKPEEA
TNSYQVAELYKKQQQIQNTSAEKGDDDFY
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
atgcagcggtcaataaagtcatttttccagcctaaaccaggaggggctataaagaaggaa
gagaaaaaaaaagatcatggttctcgaaaagagaaatgtactactaccagtaaaaatggc
ggggaacatccattaaaagagagaaatggtacaaccctggtcagtgattccgattctcct
gtaaaacgtattccaaagaagattacacgggtattggacagtgatgaggaagagactatg
gattttgaaaccacagaacccacaaaagataattctgaagcaagtcaaaaagaaaagcca
gctactccaccagttgctgtttcaggggaaggtggaaatggggattccagtgaaaaatcc
tccaatgctgcttcaccagatgcttctgttactgcttccaacattcccaaacgcaaaaca
gctcgcaagcagataaccaaaagaaaattagaaaatatttcagaacaagataaacaggat
caagagttgaatgacaaagaggcaactgccaagcgtcaaaagaaagaggcagatgaagga
ttgtctcccaagaactctgaatcaggcaaagagagcgaacaatgtgccatggacacatca
cctgaaaagacaaaaacacctgttaataaatctgcagttaagtctgaacctgaagaagag
actggacaatgtaccacagactcatcacctaaaaagactgaagaaaaaacaggtgcaagt
ccatcttctggcaactcaaaaaagggtaaaggaaagtcagacaaattctttgaaaagaag
ggtaaaaaagtttcagagaaaaagactaaaaatcaatcatctgaaaaagagagtgaagac
atgtctgacaaacactcagaggaagagagtaaagtctctgaaaaaacttctgaaaaagaa
gtttctgaaaagactactgagaagtcctcagctaacactcctgcaaagcccaccaaaaat
atttcaagcttctttggagccaccaagcaagatgttgcagaccaacaggcagattacagt
ccatcaaaaaatagttatcatccagtaaatgatgcctgctggactaatggccagatggtt
ccatacctggcagttgcacgcacctttgaaatgattgaagatgaatctgcacgcttaaag
aacatagagactcttagtaattttctgcgttctgttatctgtctgtctccgggggatctt
ttgccttgtatctacctctgtttgaaccgcttgggtcctgcttatgaagggcttgaactt
ggtttaggagaaactatattaatgaaagcgattgcacaagcgactgggcgtcagttagat
aaaattaaagctgaggcacaagaaaagggggatcttggacttgttgcggagagcagccga
agtaaccagcgcaccatgttcacaccaccaaaacttactgttttgggcgtctttaacaag
ctgaaagagattgccaagatgactggtaatgcttctatgaataagaaaattgatgtcatt
aaaggcttgtttgtggcatgcaggcattctgaagcacgttacattgctagatctttagga
ggaaaacttcgaataggattggcggagctatctgttctggcagctatctcacaggctgtg
tgccttacaccaccaggccaagagtttccacctgctgtgatagatgcctcaaaggggatg
agcacagaggctaaaaaagcatggattgaggagcattctttgatcctgaagcagacattc
tgtgagttaccaaactatgatgccgttattccagcacttctgaagcatggaattaaggag
cttccccaacattgccaccttactccaggggtcccattaaagccaatgttggcacacccg
actaagggagttggtgaagtgctgaagaggtttgaagaagctgcttttacctctgaatat
aaatatgatggagagcgtgcacagatacatattctggagaatggagaagtgcacgtatac
agcagaaatcaggaaaacaatacatcaaaatatccggacataatcggcagaattcccaag
gtaaagaaagacagtgtaaagtcttgtatcattgattcagaggctgttgcatgggaccca
cagaaaaagcagatccagcccttccaagtgctcactactagaaaacgaaaggatgtggaa
gcttcagaaataaaagtccaagtgtgtgtgtatgcttttgacatgctgtatttaaatgga
gagtctctagttagagaaccattttctagaagacgccagctactaagagagtcttttcaa
gaggtggaaggagaattcatgtttgctacatatatggacacatcaaacacagatgaaata
tcagagtttcttgatcagtcaattaaagattcttgtgaaggcctgatggtaaaaactcta
gaggagaatgccacatatgaaattgcaaagcgttcccacaattggttaaagataaagaaa
gattacttggagggattaggagacactttggatctggttgttattggtgcctatttgggg
aaaggaaagcgaactgggaaatatggaggctttttactggcatcatatgatgaagagagt
gaagaatatcagacgatatgcaagattggaacaggtttcacggatgaggatttggaaacc
cactacaatttcctgaaggaccatgtcattgacggagcacgcagctactaccgctgggac
agttcaacacagccagatcactggcttgagcctgtgcaagtttgggaagtgaagtgtgca
gacctttcaatctctcctgtacataaagctgcactaggactggtggaggatgaaaaggga
atttcactacgcttcccacgttttcttcgaattcgagatgataaaaagccagaagaagct
acaaacagttatcaggttgccgagctttataagaaacaacaacaaatacagaacacatct
gcagagaaaggagatgatgatttctactag
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integrated database retrieval system
