Novosphingobium resinovorum: BES08_21660
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Entry
BES08_21660 CDS
T04490
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
nre
Novosphingobium resinovorum
Pathway
nre03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nre00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BES08_21660
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nre03400
]
BES08_21660
Enzymes [BR:
nre01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BES08_21660
DNA repair and recombination proteins [BR:
nre03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BES08_21660
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
AOR79438
UniProt:
A0A031JR67
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All DBs
Position
pSA1:complement(936274..938784)
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AA seq
836 aa
AA seq
DB search
MARATKAKPTSAEDRLAKYREKRDFARTAEPSGASEPTPGNGFVVQKHAATRLHYDFRLE
LDGTLVSWAVTRGPSANPDDKRLAVRTEDHPLDYARFEGTIPKGEYGGGTVMLWDNGTWE
PLAGKDPVKTLAEGHLHFTLHGRRMKGEWIMFRLKPRGKEKGENWILRKVDDEFAGGSDD
LIGIHLTSVDSGRTMEEIAAGKPVRKQGGKAKGPAAKRKSSSAAPRRAENKSKLPPFQPV
QLAALVDHVPPGDRWLHELKYDGYRTLIAVGGVEGRAYTRSGLDWSDRFAGLITEATQLD
VESALIDGEAVVTLPDGRTSFQALQAALKDNPGAIDYFAFDLLEMNGEDLTSLPLIERKE
RLASILEGQKGRLRYSDHIVGNGEKLLTSFCEAGLEGVISKRVDARYSGSRSGSWVKTKC
IRRQEFVIVGWTPSDKQRGFRSLLLGVHEDGKLRYAGKVGTGFTGDEIERLLEIMAPLVR
KEPTVQAPRSAVRGAHWIEAKLVAEIAYLEFTDEGVLRHPSYLGLREDKKPEAVVIEKEA
PVAVATAAPASTVKVSNRDRVIFPEGKLTKGQLADYYELVAPLMLPWAGSRPVSLVRCPQ
GRAKKCFFQKHDAGSFGDDVKHIGIREKDGHDEAYLFVDTPAGLLTCVQMGTIEFHGWGA
RIEDVEKADRLVFDLDPDEGLGFKDVVSAAFHVRDLLAQMGLTTFPMVTGGKGVHVIAPL
TPSAEWPQVKDFAHRFAQALEQAEPDRYTAALSKARRTGRIFVDYLRNQRGATAVMPYSA
RNREFAPIAVPLTWDELHDLDAPSHWHIGDGGEMLKRASSKNLAHWGRADQVLPDL
NT seq
2511 nt
NT seq
+upstream
nt +downstream
nt
atggcacgggcgacaaaggcgaaaccaacttcggcagaagatcggctcgcgaaatatcgc
gagaagcgggatttcgcgcgtaccgcggaaccctccggtgcctccgagccgacgccgggt
aatggcttcgttgtccagaagcatgccgcgacgcgcctgcattatgacttccgtctcgag
ctggacggcacgctggtcagctgggcggtgacccgagggccaagcgctaaccccgacgac
aaacgcctggcagtccgtactgaagaccacccgctcgattatgcccgtttcgaagggacc
attccgaagggggagtatggtggcggcaccgtgatgctctgggacaatggcacctgggag
ccgctcgcgggcaaggatcccgtcaaaaccctcgcagaagggcatctgcatttcaccctt
cacggccgccgcatgaagggcgagtggatcatgttccgcctcaagccacgcggaaaagag
aagggagaaaactggatcctgcgtaaggtcgacgacgagttcgcaggtggctcggatgac
cttatcggcatccatctcacgagcgtcgacagcggacggacgatggaagaaatcgctgca
ggcaagccggtccggaaacagggcggcaaagccaaaggccccgccgcgaaacgcaaatca
tcgagcgccgcgccccgaagggccgagaacaaaagcaaactcccgccattccagcctgtc
cagcttgctgctctcgtcgatcacgtgccaccgggcgatcgctggctgcatgagttgaag
tatgacggctatcgaacgctcattgccgttggcggcgtcgaagggcgggcctatacccgg
tcaggtctggactggtcggatcggttcgcaggccttatcacagaggctacgcagcttgac
gttgaaagcgcactgatagacggagaggccgtcgtaacgctgccggatggccggaccagc
tttcaggcgctgcaagccgctttgaaggacaatccgggggccatcgactatttcgcgttc
gacctgctggaaatgaacggcgaggatctcaccagcttgccgctgattgagcgtaaggag
aggctggcgagcattcttgagggccaaaagggtcggctgcgctattcagatcatatcgtc
ggcaacggtgaaaagctgctgaccagtttttgcgaggcagggctggaaggcgtcatatcg
aaacgcgtcgacgctcggtatagcggctcgcggagcggaagctgggtcaagaccaagtgc
atacgccgccaggagttcgttatcgtaggctggacaccttctgacaagcagcgggggttc
cgctcgcttcttttgggcgtacacgaggatgggaagctgcgatacgccggcaaggtcggc
acgggatttaccggcgacgagatagagcgccttctggaaatcatggcgcccctcgtgcgc
aaggagccgacggttcaggctccgcggtctgctgtgcgcggcgcccactggatcgaggcg
aagctggttgcggagattgcgtacctcgagttcaccgatgagggggtgctgcgccatccc
agctaccttgggcttcgagaagataaaaagcccgaagcggtggtgatcgagaaggaggcc
ccggtggcggttgccacggccgcgcccgcgagcacggtgaaagtgagcaaccgggacaga
gtgatcttcccggagggcaagcttaccaagggccagctggcagactattacgaattggtt
gcaccgctcatgctcccctgggcaggaagccggcccgtcagtctcgttcgctgtccgcaa
ggccgggcgaagaagtgcttctttcagaagcatgatgcgggcagcttcggcgatgacgta
aaacacatcggcattcgcgaaaaggacgggcatgacgaggcctatctcttcgtcgacact
ccggcaggtctgctgacctgtgtgcagatgggcacgatcgagttccatggctggggcgcg
cggatcgaggacgtcgaaaaggccgacaggctggtttttgatctcgaccccgatgaagga
cttgggttcaaggatgtcgtctcggccgctttccatgtgcgcgatctcctcgcccagatg
gggcttaccacattccccatggtcaccggcggcaagggggttcatgtgatcgccccgctc
accccatcggccgaatggccgcaggtgaaggattttgctcatcggttcgctcaagcgctg
gagcaggcagaacccgatcgctatacagccgcgttgtccaaggcccggcggacagggcgc
atattcgtcgactacctgcgcaaccagcgcggcgcgaccgctgtgatgccctacagcgcc
cgtaaccgcgagtttgcgcccatcgccgttcctctgacatgggatgaactgcacgatctc
gatgcgccttcgcattggcatattggtgacggtggcgaaatgctgaagcgcgcgtcgtcc
aaaaacctcgcccactgggggcgggcggaccaggtgctgcccgatttgtag
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