Nocardia mangyaensis: BOX37_03275
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Entry
BOX37_03275 CDS
T04582
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
nsl
Nocardia mangyaensis
Pathway
nsl03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
nsl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BOX37_03275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nsl03400
]
BOX37_03275
Enzymes [BR:
nsl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BOX37_03275
DNA repair and recombination proteins [BR:
nsl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BOX37_03275
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
APE33146
UniProt:
A0A1J0VM97
LinkDB
All DBs
Position
706943..709210
Genome browser
AA seq
755 aa
AA seq
DB search
MVRREFRGAPGEPAIEVELSNLDKVLYPATGTTKGEVIAYYSAITEAMLPHIAGRPVTRK
RWPNGVDDPDFFEKNLPEHAPAWIHRVAIEHSSRRVVYPVLDSEAGMAWLGQQAALEVHV
PQWRFYGTERGPATRIVFDLDPGPGAGLAECARVALAVRDMVAEIGMRAYPVTSGSKGIH
LYVPLDRPVSSRGAATVAKQVAANLEQLHPDLVTATMAKSARTGKVLLDWSQNNAAKTTI
APYSLRGRAEPHAAAPREWSEIENAKSLRQLRFDEVLARWKADGDLLADLDPPLPRHPDS
LTKYRSMRDPRRTPEPVPADAPEPGPGDRFVVQEHHARRLHWDVRLEHEGVLASWAVPKG
PPTEPKHNRLAVRTEDHPLEYLHFHGTIPKGEYGAGEMTIWDSGTYVIEKWREDEVIVEF
DGRRLQGRYAFIQTKGDQWLMHYMRDQNRREVPLDNGSGGLARGLSPMLATAGEVESLAA
GEWAFETKWDGFRVIVEIDDGEVVIRSRAGNTVTARYPRLAALGTELAGHRVVLDGEAVV
LDDKGVSDLAALQADSARAIFVAFDVLHLDGTSLLRKKYTDRRAVLEALGRLAPSMNVAG
LLPGSGAEAMELSREQGQEGVVAKRVDSVYQPGKRSQTWLKQRNWRSREVVIGGWRRSTA
RPFKSLLLGVPHENGLVYVGRVGTGFGAEQQRRIAAQLQRLHRKTSPFTSEMTAEECQDA
EWATPSLTGTVRFQAWTDTGRLWHPVWDGITSVPD
NT seq
2268 nt
NT seq
+upstream
nt +downstream
nt
atggtccgccgggagttccggggcgcgccgggtgagccggcgatcgaggttgagctcagc
aacctcgacaaggtgctgtatccggccaccggaacgaccaaaggcgaggtgatcgcctac
tattcggcgatcaccgaggcgatgctgccgcacatcgcggggcgtccggtcaccaggaag
cggtggccgaacggggtcgatgatcccgacttcttcgagaagaacctgcccgagcacgcg
cccgcatggatccaccgcgtcgcgatcgagcattccagccgccgggtggtgtacccggtg
ctcgactccgaggccgggatggcctggctcggacagcaggccgcgctggaagtccatgtg
ccgcaatggcgcttctacggtaccgaacgcggcccggccaccaggatcgtgttcgatctc
gaccccggccccggggccgggctggccgaatgcgcgcgcgtggcgctggccgtgcgcgac
atggtcgccgagatcgggatgcgggcctacccggtgaccagtggcagcaagggaattcac
ctctacgtaccgctggaccggccggtgagctcacggggcgccgccactgtcgccaagcag
gtggccgccaatctcgaacagctgcacccggatctggtgacggcgacgatggcgaaatcg
gcccgcaccgggaaagtgttgctggactggagccagaacaatgccgccaagaccaccatc
gccccgtactcgctgcgcggtcgcgccgaaccccatgcggcggcgccgcgcgagtggtcc
gagatcgagaacgcgaagtcgctgcgccagttacgtttcgacgaggtgctcgcccgctgg
aaagccgacggtgacctgctcgccgacctcgacccgccgctgccgcgccaccccgactcg
ctgaccaagtaccgcagcatgcgcgatccgcggcgcactcccgagccggtgcctgccgat
gcgcccgagccggggccgggtgaccggttcgtcgtccaggagcatcacgcgcgccgcctg
cactgggacgtgcgcctggaacacgagggggtgctggcctcgtgggcggtgcccaagggg
ccgccgaccgagccgaaacacaatcgcctcgccgtgcgcaccgaggatcatccgctcgaa
tacctgcacttccacggcaccatcccgaagggcgaatacggtgcgggggagatgacgatc
tgggattcgggcacctacgtcatcgagaagtggcgcgaggacgaggtgatcgtcgagttc
gacgggcggcgtctgcagggcaggtacgccttcatccagaccaagggcgatcagtggctc
atgcactacatgcgcgaccagaatcgtcgagaagtgccgttggacaacgggtccggtggc
ctggcgcgcggactgtcgcccatgttggccaccgcgggcgaggtcgagtcgctggccgcg
ggggagtgggccttcgagaccaaatgggatgggttccgggtgatcgtcgagatcgacgac
ggtgaggtcgtcattcgcagccgagcgggcaacacggtcaccgccagatacccgcgcctg
gccgcgctcggtaccgaactggccgggcacagggtggtcctcgacggtgaggccgtggtg
ctcgacgacaagggggtctcggatctcgctgctctgcaggctgattcggcgcgggcgatc
ttcgtcgccttcgacgtgctccatctcgacggcacctcgctgctgcgcaagaagtacacc
gaccggcgcgcggtgctcgaggcgctcggcagactggcgccgtcgatgaatgtcgccggg
ttgctgccgggctcgggtgccgaggcgatggaactcagccgcgagcaggggcaggagggc
gtggtcgccaagcgggtcgactcggtgtatcagccgggcaagcgcagtcagacctggctc
aagcagcgcaactggcgctcgcgggaggtggtgatcggaggctggcgacgcagtaccgca
cggccgttcaagtcgctgctgctcggtgtcccgcacgagaacgggctcgtctatgtgggc
cgggtcggtaccggtttcggcgcggaacagcagcgccggatcgccgcgcaattgcagcgc
ttacaccgcaagacttcgccgttcaccagcgagatgaccgccgaggaatgccaggacgcc
gaatgggcgacgccgtcgctcaccggcaccgtgcgcttccaggcctggaccgataccggg
cggctgtggcatcccgtgtgggacggcatcacgagcgtgccggactga
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