Neomonachus schauinslandi (Hawaiian monk seal): 110577790
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Entry
110577790 CDS
T08474
Symbol
SMARCC2
Name
(RefSeq) SWI/SNF complex subunit SMARCC2
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
nsu
Neomonachus schauinslandi (Hawaiian monk seal)
Pathway
nsu03082
ATP-dependent chromatin remodeling
nsu04714
Thermogenesis
nsu05225
Hepatocellular carcinoma
Brite
KEGG Orthology (KO) [BR:
nsu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
110577790 (SMARCC2)
09150 Organismal Systems
09159 Environmental adaptation
04714 Thermogenesis
110577790 (SMARCC2)
09160 Human Diseases
09162 Cancer: specific types
05225 Hepatocellular carcinoma
110577790 (SMARCC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
nsu03021
]
110577790 (SMARCC2)
03036 Chromosome and associated proteins [BR:
nsu03036
]
110577790 (SMARCC2)
Transcription machinery [BR:
nsu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
110577790 (SMARCC2)
Chromosome and associated proteins [BR:
nsu03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
110577790 (SMARCC2)
PBAF complex
110577790 (SMARCC2)
GBAF(ncBAF) complex
110577790 (SMARCC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
Chromo
CD99L2
Motif
Other DBs
NCBI-GeneID:
110577790
NCBI-ProteinID:
XP_044771130
EnsemblRapid:
ENSNSCG00000022369
UniProt:
A0A8M1MDI9
LinkDB
All DBs
Position
5:58083078..58104560
Genome browser
AA seq
1118 aa
AA seq
DB search
MCKYIQAEPPTNKSLSSLVVQLLQFQEEVFGKHVSNAPLTKLPIKCFLDFKAGGSLCHIL
AAAYKFKSDQGWRRYDFQNPSRMDRNVEMFMTIEKSLVQNNCLSRPNIFLCPEIEPKLLG
KLKDIIKRHQGTVTEDKNNASHVVYPVPGNLEEEEWVRPVMKRDKQVLLHWGYYPDSYDT
WIPASEIEASVEDAPTPEKPRKVHAKWILDTDTFNEWMNEEDYEVNDDKSPVSRRKKISA
KTLTDEVNSPDSDRRDKKGGNYKKRKRSPSPSPTPEAKKKNAKKGPSTPYTKSKRGHREE
EQEDLTKDMDEPSPVPNVEEVTLPKTVNTKKDSESAPVKGGTMTDLDEQEDESMETTGKD
EDENSTGNKGEQTKNPDLHEDNVTEQTHHIIIPSYAAWFDYNSVHAIERRALPEFFNGKN
KSKTPEIYLAYRNFMIDTYRLNPQEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQV
DAESRPTPMGPPPTSHFHVLADTPSGLVPLQPKTPQGRQVDADTKAGRKGKELDDLVPET
AKGKPELQTSASQQMLTFPDKGKEKPTDMQNFGLRTDMYTKKNVPSKSKAAASATREWTE
QETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEDSEASLGPLAYQP
IPFSQSGNPVMSTVAFLASVVDPRVASAAAKSALEEFSKMKEEVPTALVEAHVRKVEEAA
KVTGKADPAFGLESSGIAGTTSDEPERIEESGTDEARAEGQATEEKKEPKEPREGVGAAE
EETKEKTSEVPKKDEERGKQGDSEKESEKSDGDPIVDPDKEKEPKEGQEEVLKDVVESEG
ERKTKVERDIGEGNLSTAAAAALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKL
RHFEELETIMDREREALEYQRQQLLADRQAFHMEQLKYAEMRARQQHFQQMHQQQQQPPP
ALPPGSQPVPPAGTAGPPALHSLAMAPASVAPAPTGGGAPPGSLGPSEQIGQAGSATGPQ
QQQPAGAPQPGAVPPGVPPPGPHGPSPFPNQPTPPAMMPGAVPGSGHPGVAAQSPAIVAA
VQGNLLPSASPLPDPGTPLPPDPTAPSPGTVTPVPPPQ
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
atgtgcaagtatatccaagctgaaccacctaccaacaagtccttgtctagcctggttgta
cagttgctacagtttcaggaagaagtttttggcaaacatgtcagcaatgcaccgctcaca
aaactgccgatcaaatgtttcttagatttcaaagcaggaggctccctgtgccatatactt
gcagctgcctacaaattcaagagtgaccagggatggcggcgttacgatttccagaatcca
tcacgcatggaccgcaacgtagaaatgttcatgaccattgagaagtccttggtgcagaat
aactgcctgtctcgacctaacatttttctgtgcccagaaattgaacctaaactgctaggg
aaattaaaggacattatcaagagacaccagggaacagtcactgaagataagaacaatgcc
tcccatgttgtgtatcctgtcccagggaacctggaagaagaggaatgggtacgaccagtc
atgaagcgggataagcaggttcttctgcactggggctactatcctgacagttacgacaca
tggatcccagccagtgaaattgaagcatctgtggaagatgctccaactcctgagaaacct
aggaaggttcacgcaaagtggatcctggacacagacactttcaatgagtggatgaacgag
gaagactatgaggtaaatgatgacaaaagccccgtctcccgccgaaagaagatttcagcc
aagacgctgacggatgaggtgaacagcccagattcagatcgacgggacaagaaagggggg
aactataagaagaggaagcgctctccctctccttcaccaaccccggaagccaagaagaaa
aacgctaagaaaggtccctcgacaccttacaccaagtcgaagcgtggccacagagaggag
gagcaagaagacctgacaaaggacatggatgagccttcaccagtccccaatgtagaggag
gtgacgttgcctaaaacagtcaacacgaagaaggattcagagtccgccccagtcaaagga
ggcaccatgactgacctggatgaacaggaggatgaaagcatggagaccacgggcaaggat
gaagatgaaaacagtacggggaacaagggggagcagacaaagaatccagacctacatgag
gacaacgtgactgaacagacccaccacatcatcattcccagctacgccgcctggtttgac
tataatagtgttcatgccatcgagcggagggctctccccgagttctttaacggcaagaac
aagtccaagactccagaaatctacctggcttatcgaaacttcatgattgacacgtaccgg
ctgaacccccaagagtatctcacctccaccgcctgccgcaggaacctggccggtgatgtc
tgtgccatcatgagggtccatgccttcctagaacagtggggtcttattaactaccaggtg
gatgctgagagtcgaccaaccccaatggggcctccgcccacctctcacttccatgtcttg
gcagacacgccatcagggctggtgcctctgcagcccaagaccccgcagggccgccaggtt
gatgctgataccaaggctgggcgaaagggcaaagagctggatgacctggtgccagagacg
gctaagggcaagccagagctgcagacctctgcttcccagcaaatgctcaccttccctgac
aaaggcaaagagaagccgacagacatgcagaactttgggctgcgcacagacatgtacaca
aagaagaacgtcccctccaagagtaaagctgcggccagtgccactcgagagtggacggaa
caggagaccctgctcctcctggaggcactggaaatgtacaaagatgactggaacaaagtg
tcagagcacgtgggaagccgcacgcaggatgagtgcatcttgcattttcttcgtcttccc
attgaagacccgtacctggaggactcagaggcctccctgggccccctggcctaccagcct
atccccttcagtcagtcaggcaaccctgttatgagcactgttgccttcctggcctctgtc
gtcgatcctcgagtcgcctctgctgctgcgaagtcggccctagaggagttctccaagatg
aaggaggaagtgcccacagccttggtggaggcccacgtccggaaagtggaggaggcagcc
aaagtgacgggcaaggcagacccggccttcggtctggagagcagcggtatcgcaggaacc
acctctgatgagcctgagcggatcgaggagagcgggacggatgaggcgcgggcagagggg
caggccacggaggagaagaaggagcccaaggaaccccgagaaggagttggggctgccgaa
gaagaaacaaaggagaagaccagcgaggtccccaagaaggacgaagagagagggaaacaa
ggtgacagcgagaaggagtcagagaagagcgacggggaccccatagttgacccggacaag
gagaaggagccaaaggaagggcaggaggaagtgctgaaggacgtggtggagtcggagggg
gagaggaagacgaaagtggagcgggacattggtgaaggcaatctgtccaccgccgccgct
gccgccctggccgccgccgccgtgaaggccaagcacctggccgctgtggaggagaggaag
atcaaatcactagtggccctgctggtggagacccagatgaaaaagttggagatcaaactc
cggcactttgaagagttggagaccatcatggaccgggagcgagaggcactggagtatcag
aggcagcagctcctggccgacagacaagccttccacatggagcagctgaagtacgcggag
atgagggcccggcagcagcacttccagcagatgcaccagcagcagcagcagcccccgcca
gccctgccgccaggctcccagcccgtcccaccggcaggcactgccgggccgcccgcgctt
cacagcctggctatggctccggcctccgtcgcccctgcccccactggcggcggggctccc
cccggaagcttgggcccctctgaacagattgggcaggcagggtcagccacggggccgcag
cagcagcaaccagctggagccccccagcctggggcagtcccaccaggggtacccccccct
ggaccccatggcccctcgccgttccccaaccaaccaactcctcccgcaatgatgccaggg
gcagtgccaggcagcgggcacccaggcgtggcggcccagagccctgccattgtggcagct
gttcagggcaacctcctgcccagtgccagcccactgccagacccaggtacccccctgcct
ccagaccccacggccccgagcccaggcacagtcacccctgtgccacctccacagtga
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