Neomonachus schauinslandi (Hawaiian monk seal): 110585841
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Entry
110585841 CDS
T08474
Symbol
COL4A1
Name
(RefSeq) collagen alpha-1(IV) chain
KO
K06237
collagen type IV alpha
Organism
nsu
Neomonachus schauinslandi (Hawaiian monk seal)
Pathway
nsu04151
PI3K-Akt signaling pathway
nsu04510
Focal adhesion
nsu04512
ECM-receptor interaction
nsu04820
Cytoskeleton in muscle cells
nsu04926
Relaxin signaling pathway
nsu04933
AGE-RAGE signaling pathway in diabetic complications
nsu04974
Protein digestion and absorption
nsu05146
Amoebiasis
nsu05165
Human papillomavirus infection
nsu05200
Pathways in cancer
nsu05222
Small cell lung cancer
Brite
KEGG Orthology (KO) [BR:
nsu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
110585841 (COL4A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
110585841 (COL4A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
110585841 (COL4A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
110585841 (COL4A1)
09150 Organismal Systems
09152 Endocrine system
04926 Relaxin signaling pathway
110585841 (COL4A1)
09154 Digestive system
04974 Protein digestion and absorption
110585841 (COL4A1)
09160 Human Diseases
09161 Cancer: overview
05200 Pathways in cancer
110585841 (COL4A1)
09162 Cancer: specific types
05222 Small cell lung cancer
110585841 (COL4A1)
09172 Infectious disease: viral
05165 Human papillomavirus infection
110585841 (COL4A1)
09174 Infectious disease: parasitic
05146 Amoebiasis
110585841 (COL4A1)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
110585841 (COL4A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
nsu04147
]
110585841 (COL4A1)
00536 Glycosaminoglycan binding proteins [BR:
nsu00536
]
110585841 (COL4A1)
Exosome [BR:
nsu04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
110585841 (COL4A1)
Glycosaminoglycan binding proteins [BR:
nsu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
110585841 (COL4A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
110585841
NCBI-ProteinID:
XP_021551670
EnsemblRapid:
ENSNSCG00000008564
UniProt:
A0A2Y9HQF1
LinkDB
All DBs
Position
3:2843129..2979315
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AA seq
1669 aa
AA seq
DB search
MGPRLGVWLLLLPAALLLHEERSRAAAKGGCAGSGCGKCDCHGVKGQKGERGLPGLQGVI
GFPGMQGPEGPQGPPGQKGDTGEPGLPGTKGTRGPPGASGYPGNPGLPGIPGQDGPPGPP
GIPGCNGTKGEPGPLGPPGLPGFAGNPGPPGLPGMKGDPGEIIGHVPGTLLKGERGFPGP
PGTPGSPGLPGLQGPVGPPGFTGPPGPPGPPGPPGEKGQMGLSFQGPKGDKGDQGVSGPP
GVPGQAQVQEKGDFATKGEKGQKGEPGFQGMPGLGEKGEPGKPGPRGKPGKDGEKGEKGS
PGFPGDAGYPGLPGREGFRGDKGEAGPPGPPGIAIGPGPSGEKGERGYPGAPGLRGEPGP
KGFPGLQGQPGPPGFPVPGQAGAPGFPGERGEKGDQGFPGTSLPGPSGRDGQPGPPGLPG
PPGQPGHTNGIVECQPGPPGDQGPPGIPGQPGLTGEVGEKGQKGDSCLICDTEGLRGPPG
PQGPPGEIGFPGQPGPKGDRGLPGRDGLEGLPGPQGTPGLMGQPGAKGEPGEIYFDARLK
GDKGDPGFPGQPGMPGRAGSPGRDGHPGLPGPKGSPGSVGLKGERGPPGGVGFPGSRGDI
GPPGPPGFGPIGPVGDKGQAGFPGTPGSPGQPGPKGEAGKVVPLPGPPGAQGLPGPPGFS
GPQGDRGFPGTPGRPGLPGEKGTVGQPGIGFPGPPGPKGVDGLPGDVGPPGSPGRPGFNG
LPGNPGVPGQKGEPGIGLPGLKGLPGLPGIPGTPGEKGNIGGAGVPGEHGAIGPPGLQGI
RGDPGPPGLQGPKGAPGAPGIGPPGAMGPPGGQGPPGSSGPPGVKGEKGFPGFPGLDMPG
PKGDKGSQGLPGLTGQSGLPGLPGQQGTPGVPGFPGPKGEMGVMGTPGQPGSPGPAGLPG
LPGEKGDHGFPGSSGPRGDPGFKGDKGDVGLPGKPGSMDKVDMGSMKGQKGDQGEKGQTG
PTGDKGSRGDPGTPGVPGKDGQAGHPGQPGPKGDPGTGGTPGAPGLPGPKGSVGGMGLPG
TPGEKGVPGIPGPQGVPGLPGEKGAKGEKGQVGLPGIGIPGRPGDKGDQGVAGFPGSPGE
KGEKGSAGIPGVPGSPGPKGSPGSVGYPGSPGLPGEKGDKGLPGSDGIPGIKGEAGLPGS
PGPTGPAGQKGEPGSDGIPGSAGEKGEAGLPGRGFPGFPGAKGEKGSKGDVGFPGQAGSP
GIPGSKGEQGFMGPPGPQGQPGLPGAPGHAVEGPKGDRGPQGQPGLPGLPGPVGPPGLPG
LDGLKGDKGNPGWPGTPGAPGPKGEPGFQGLPGIGGSPGITGSKGDMGPPGVPGFQGQKG
LPGLQGAKGDQGDQGFPGSKGLPGPPGPPGPYDVIKGEPGLPGPEGPAGLKGLPGPPGPK
GQQGVTGSVGLPGPPGVPGFDGAPGQKGETGPFGPPGPRGFPGPPGPDGLPGSMGPPGTP
SVDHGFLVTRHSQTTDDPQCPPGTKILYHGYSLLYVQGNERAHGQDLGTAGSCLRKFSTM
PFLFCNINNVCNFASRNDYSYWLSTPEPMPMSMAPIAGDNIRPFISRCAVCEAPAMVMAV
HSQTIQIPQCPSGWSSLWIGYSFVMHTSAGAEGSGQALASPGSCLEEFRSAPFIECHGRG
TCNYYANAYSFWLATIERSEMFKKPTPSTLKAGELRTHVSRCQVCMRRT
NT seq
5010 nt
NT seq
+upstream
nt +downstream
nt
atggggccccggctgggcgtctggctgcttctgctgcccgccgccctcctgctccacgag
gagcgcagccgggccgcggcgaagggtggttgtgctggctctggctgtgggaagtgtgac
tgccatggagtgaagggacagaagggcgaaagaggcctcccagggttgcaaggtgtcatc
gggtttcccgggatgcaaggacccgaggggccgcaggggccaccaggacaaaagggtgac
actggagaacccgggctgcctggaacgaaagggacaagaggaccccctggagcatcgggt
taccctggaaacccaggactgcctggtattcctggccaagacggtccccctggtcctcca
ggtatccccggatgcaatggaacaaagggcgagccagggcctctggggcccccgggtttg
cctggattcgctggaaatcctggacctccaggattaccaggaatgaagggggatccaggt
gaaatcattggccatgtgcctgggaccctgttgaaaggtgaaagaggatttcctggaccc
ccaggaacaccaggctcgccaggactgccaggcctgcaaggtcctgttggccctccagga
tttaccgggccaccaggtcctccaggccctcctggccctccaggtgaaaaggggcaaatg
ggcttaagttttcaagggccaaaaggcgacaagggtgaccagggagtcagtgggcctccg
ggagtgccaggacaagctcaagttcaagaaaaaggagacttcgccactaaaggagagaag
ggtcaaaaaggtgaacctggatttcagggaatgccagggcttggagagaaaggggagcct
ggaaaaccagggccccgaggaaaacctgggaaagatggcgaaaaaggagaaaaagggagt
ccaggcttcccaggcgacgcggggtacccgggactcccaggccgcgaaggtttcagggga
gacaaaggtgaagcaggtcctccaggcccacctggaattgccatcggcccaggaccctcc
ggagagaaaggagagcgggggtacccgggcgccccagggttgagaggagagccaggcccc
aaagggttcccaggattacaaggccagccaggtcctccaggcttcccggtaccagggcag
gcgggtgctcctggctttcctggtgaaagaggcgagaaaggtgaccaagggtttccaggc
acctctttgccgggaccaagtggaagagatgggcaaccgggcccccccgggcttcccggg
ccccctggacagccaggccacacgaatggaattgtggaatgtcagcctggaccgcctggg
gatcagggtccccctggaattccggggcagccagggctcacgggcgaggttggagaaaaa
ggtcagaaaggagacagctgcctcatctgtgacacagaaggacttcgtgggccccctggg
ccgcagggccccccaggagaaataggtttcccaggacagccagggccgaagggcgacaga
ggcttacccggcagagatggtctggaaggattgcctggcccgcaaggcacaccagggctg
atgggccagccgggagccaagggagagcctggcgagatttacttcgacgcacggctcaaa
ggagacaaaggagacccaggctttccaggacagcctgggatgccaggcagagcagggtct
cctgggagagatggccatccgggtctgcccggccccaaaggctccccgggttcagtagga
ttgaaaggagagcgtggaccccctgggggagttggattccccggcagtcgaggtgacatc
ggccctcctgggcctccagggtttggccctattggccctgttggtgacaaaggacaagcg
ggttttccggggacccctggatccccaggccagccaggtcccaagggtgaagcaggaaaa
gttgtgcccctacctggtccccctggagcacaaggacttccgggacccccaggcttctca
gggccacaaggtgaccgaggttttcctggaaccccaggaaggccaggcctcccaggagag
aagggcactgtcggccagcccggaatcggatttccagggccccccggccccaaaggtgtt
gatggcttacctggagacgtgggacctcctgggagtccgggtcgcccgggatttaacggc
ttacctggcaacccgggtgtgcccggccaaaagggagagccgggcattggtctaccagga
ctcaaaggattgccgggtcttcccggcattcctggcacacctggagagaaggggaacatc
gggggagcaggcgttcctggagagcatggtgctatcggccccccaggccttcagggaatc
agaggtgacccaggaccgcctggattacaaggtcccaaaggagctccgggagctcctgga
attggcccccccggagcgatgggcccccccggaggacagggaccaccaggatcctcaggc
cctcctggagtgaaaggagagaagggctttcccggatttccaggcctggacatgccaggt
cccaaaggagataaagggtcccaagggctgcctggcctgacgggacagtcggggctccct
ggtctccctggacagcagggcacacctggggttcctgggtttccaggtcccaagggagag
atgggcgtcatggggaccccggggcagcctggctcaccgggaccagcgggcctgccagga
ttgccaggagagaaaggggaccacggcttcccgggctcctcggggcccaggggagaccct
ggcttcaagggggacaaaggagacgtgggtctccccggcaagcctggctccatggataag
gtggacatgggcagcatgaagggtcagaagggagaccaaggagagaaaggacagaccgga
ccaactggtgataaaggatcccggggagaccctggaaccccgggagtacctggaaaggac
gggcaggcggggcatcctgggcagccaggacctaaaggtgacccaggcacaggtggaacc
ccgggtgccccaggactccctggacccaaaggatcggttggtggcatgggcctgccagga
acaccgggagaaaaaggtgtgcctggaatccccggcccgcagggcgtccctggcttaccc
ggggagaaaggagccaaaggagagaaagggcaggtgggcctacctggcattggaattccg
ggccgtcctggggacaagggagatcaaggggtcgcaggctttccggggagtcctggagag
aaaggagaaaaaggcagtgctggtatcccaggggtccctggctccccaggccccaaaggc
tcgccagggagtgtcggctatccaggaagccccggattgcctggagaaaaaggtgacaaa
ggcctcccgggatcggatggcattcctggcatcaaaggagaagcaggtcttcctgggagt
cctggccccaccggcccagctggccagaaaggggagcccggcagtgacggaatcccgggg
tcagcgggagagaagggtgaagcaggtctgcccgggagaggattcccagggtttccagga
gccaaaggagagaaaggttcaaagggcgacgtgggtttcccaggacaagccgggagtcca
ggcatccccggatccaaaggagagcaaggattcatgggtcccccggggccgcaaggacag
ccgggcttacctggagctccgggccacgctgtggaggggcccaaaggagaccggggccca
cagggtcaacctggcctgccagggcttccaggacctgtggggcctccggggctccctggg
cttgatggactcaaaggtgacaaaggaaacccgggctggccggggactcccggagctcca
gggcccaagggagagccaggattccaaggcctgcctgggattggtggctcgccagggatc
acaggttctaagggtgacatggggcctccaggagtgccaggatttcaaggtcagaaaggc
ctccctggcctgcagggagcgaagggggatcaaggtgaccagggcttccccggaagtaaa
ggccttcccggccccccgggtcccccgggaccctacgatgtcatcaaaggggagccaggg
cttcctggtcctgagggtcccgcaggtctgaaggggctcccggggcctccaggccccaaa
ggacagcaaggtgtgacaggatccgtgggcttacctggaccgcccggtgttcctggtttt
gacggcgcccctggccagaaaggagagacaggacccttcggccctcctggtccgcgaggg
tttccgggcccgccaggccctgatgggttgccaggatccatgggtcccccaggcaccccg
tctgttgatcacggcttccttgtgaccaggcacagtcagacaacggatgacccacagtgt
cctcctgggaccaaaattctttaccacgggtactccttgctctatgtgcaaggcaacgaa
agggcccatggccaggacttgggcacggctggaagctgcctgcgcaagttcagtacgatg
cccttccttttctgcaacatcaacaatgtgtgtaacttcgcctcccgaaatgactactcc
tactggttgtccacgcctgagcccatgcccatgtccatggcgcccatcgccggggataat
atcagaccgtttattagcaggtgcgcagtgtgtgaggcgccagccatggtgatggccgtg
cacagccagaccattcagatcccgcagtgccccagcggctggtcctccctctggattggc
tattccttcgtgatgcacaccagtgctggtgctgaaggttcgggccaagccctcgcgtcc
cccgggtcttgtctggaagagtttaggagcgcgccattcatcgagtgccacggccgtggg
acctgcaactactacgcgaacgcttacagcttttggcttgccaccatcgagagaagcgag
atgttcaagaagcccacgccatccaccttgaaggccggggagctgcgcacacacgtcagt
cgctgccaagtctgtatgagaagaacgtaa
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