Neomonachus schauinslandi (Hawaiian monk seal): 110593078
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Entry
110593078 CDS
T08474
Symbol
COL1A1
Name
(RefSeq) collagen alpha-1(I) chain
KO
K06236
collagen type I alpha
Organism
nsu
Neomonachus schauinslandi (Hawaiian monk seal)
Pathway
nsu04151
PI3K-Akt signaling pathway
nsu04510
Focal adhesion
nsu04512
ECM-receptor interaction
nsu04611
Platelet activation
nsu04820
Cytoskeleton in muscle cells
nsu04926
Relaxin signaling pathway
nsu04933
AGE-RAGE signaling pathway in diabetic complications
nsu04974
Protein digestion and absorption
nsu05146
Amoebiasis
nsu05165
Human papillomavirus infection
nsu05205
Proteoglycans in cancer
nsu05415
Diabetic cardiomyopathy
Brite
KEGG Orthology (KO) [BR:
nsu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
110593078 (COL1A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
110593078 (COL1A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
110593078 (COL1A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
110593078 (COL1A1)
09150 Organismal Systems
09151 Immune system
04611 Platelet activation
110593078 (COL1A1)
09152 Endocrine system
04926 Relaxin signaling pathway
110593078 (COL1A1)
09154 Digestive system
04974 Protein digestion and absorption
110593078 (COL1A1)
09160 Human Diseases
09161 Cancer: overview
05205 Proteoglycans in cancer
110593078 (COL1A1)
09172 Infectious disease: viral
05165 Human papillomavirus infection
110593078 (COL1A1)
09174 Infectious disease: parasitic
05146 Amoebiasis
110593078 (COL1A1)
09166 Cardiovascular disease
05415 Diabetic cardiomyopathy
110593078 (COL1A1)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
110593078 (COL1A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
nsu00536
]
110593078 (COL1A1)
Glycosaminoglycan binding proteins [BR:
nsu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
110593078 (COL1A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
110593078
NCBI-ProteinID:
XP_021560003
EnsemblRapid:
ENSNSCG00000001779
UniProt:
A0A2Y9I7Y8
LinkDB
All DBs
Position
15:34935208..34952391
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AA seq
1460 aa
AA seq
DB search
MFSFVDLRLLLFLAATALLTRGQEEGQEEDIPPVTCVQNGLRYYDRDVWKPEACRICVCD
NGNVLCDDVICDETKNCPGAQVPPGECCPVCPDGEASPTDQETTGVEGPKGDTGPRGPRG
PAGPPGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFAPQMSYGYDEKSTGGIAVPGPMGPS
GPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGER
GPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPR
GLPGERGRPGASGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGARGSE
GPQGVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPS
GPPGPKGNSGEPGAPGNKGDTGAKGEPGPTGIQGPPGPAGEEGKRGARGEPGPTGLPGPP
GERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEAGRPGEAGLPGAKGLTGSP
GSPGPDGKPGPTGPPGQDGRPGPPGSPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPP
GAVGPAGKDGEAGAQGAPGPAGPAGERGEQGPAGSPGFQGLPGPSGPPGEAGKPGEQGVP
GDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGGQGAP
GLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGEA
GPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPA
GPTGPPGSIGNVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKE
GGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLP
GQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPIGPPGLAGPPGESGREGSPGAEGSP
GRDGSPGPKGDRGETGPSGPTGAPGAPGAPGPVGPAGKNGDRGETGPAGPAGPIGPVGAR
GPTGPQGPRGDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPP
GSAGSPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPGPPSGGFDFSFLPQP
PQEKAHDGGRYYRADDANVVRDRDLEVDTTLKSLSQQIENIRSPEGSRKNPARTCRDLKM
CHSDWKSGEYWIDPNQGCNLDAIKVFCNMETGETCVYPTQPHVAQKNWYISKNPKDKRHV
WYGESMTDGFQFEYGGQGSDPADVAIQLTFLRLMSTEASQNITYHCKNSVAYMDQQTGNL
KKALLLQGSNEIEIRAEGNSRFTYSVTYDGCTSHTGAWGKTVIEYKTTKTSRLPIIDVAP
LDVGAPDQEFGMDVGPVCFL
NT seq
4383 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggacctccggctcctgctcttcttagcggccaccgccctcctgacg
cgcggccaagaggagggccaagaagaagacatcccaccagtcacctgcgtacagaacggc
ctcaggtactatgaccgagacgtatggaaacccgaggcctgtcggatctgtgtctgcgac
aacggcaacgtgttgtgcgatgacgtgatctgcgacgaaaccaagaactgtcccggcgcc
caagtccccccgggcgagtgctgccccgtctgccccgacggcgaggcgtctcctaccgac
caagaaaccacaggagttgagggacccaagggagatactggcccccgaggtccaagggga
cctgccggcccccctggccgagatggcatccccggacagcctggacttcccggacccccc
gggcctcccggaccccccggaccccctggcctcggaggaaactttgctccccaaatgtct
tatggctacgatgagaaatcaactggaggaatcgccgtgcctggccccatgggtccttct
ggtcctcgtggtctccctggcccccctggtgcacctggtccccaaggtttccaaggcccc
cctggtgagcccggcgagcctggagcctcaggtcccatgggtccccgtggtccccctggc
ccccctggcaagaacggagatgatggtgaagctggaaagcctggtcgtcctggtgagcgt
ggacctcctggacctcagggtgcccggggattgcctggaacagctggccttcctggaatg
aagggacacagaggtttcagtggtttggatggtgccaagggagatgctggtcctgctggt
cctaagggtgagcccggtagccctggtgaaaacggagctcctggtcagatgggcccccgt
ggtctgcctggtgagagaggtcggcccggagcctccggccctgctggtgctcgtggaaac
gatggtgctactggtgcagctgggccccccggtcccactggccccgctggtccccctgga
ttccctggtgctgttggtgctaagggtgaagctggtccccaaggagcccgtggctctgaa
ggtccccagggtgtgcgtggtgagcccggcccccctggccctgctggtgctgctggtcct
gctggaaatcctggtgctgacggacagccgggtgctaaaggtgctaatggcgctcctggc
attgctggtgctcccggcttccctggtgcccgaggcccctctgggccccagggccccagc
ggtcctcctggtcccaagggtaacagcggtgaacctggtgctcctgggaacaaaggagac
actggcgccaagggagagcccggccccactggtattcaaggcccccctggccccgccggg
gaagaaggaaagcgaggagcccgaggtgaacctggacccactggcctgcccggacccccc
ggcgagcgtgggggccctggtagccgcggtttccctggggcagatggcgtcgctggtccc
aagggccccgctggtgaacgtggttcccccggccccgctggccccaagggttctcctggt
gaagccggtcgccctggtgaagctggtctgcctggtgccaagggtctgactggaagtccc
ggcagtcctggtccagatggcaaacccggccccactggtccccctggtcaagatggtcgc
cccggaccgccaggctcccccggcgcccgtggtcaggctggtgtgatgggattccctggg
cctaaaggtgctgctggagagcctggcaaggccggagagcgaggtgtgcctgggccccct
ggtgctgttggtcctgctggcaaagatggagaagctggagctcagggagcccccggccct
gctggccccgctggtgagagaggtgaacaaggccccgctggctcccccggattccagggt
ctccctggcccctctggtcctcccggtgaagcaggcaaacccggtgaacagggtgttcct
ggcgaccttggcgcccccggcccctctggagcaagaggcgagagaggtttccccggtgaa
cgcggcgtgcaaggcccccccggccccgcaggtccccggggagctaacggcgcccctggc
aatgacggtgctaagggtgatgctggcgcccccggagccccaggtggccagggcgctcct
ggccttcagggaatgcccggtgaacgaggcgcggctggtcttcccggccctaagggtgac
agaggcgatgctggtcccaaaggtgctgatggttctcctggcaaggatggtgtccgtggt
ctgactggccccattggtcctcctggccccgctggtgcccctggtgacaagggtgaagct
ggtccgagcggccctgctggtcccactggagctcgtggtgcccccggagaccgtggtgag
cctggtccccccggccctgctggcttcgctggcccccctggtgccgacggccaacccggt
gctaaaggcgagcccggtgatgctggtgctaaaggcgatgctggtccccctggccccgcc
ggccccactggcccccctggctccattggtaacgttggtgctcctggacccaaaggtgct
cgtggcagcgccggtccccctggtgctactggttttcctggtgctgctggccgagtcggc
ccccccggcccctctggaaatgccgggccccctggccctcctggccctgctggcaaagaa
ggcggcaaaggcccccgtggtgagaccggccccgccggacgtcccggtgaagtcgggccc
cccggtccccccggccccgctggcgagaagggatcccctggtgctgatggacctgctggt
gctcccggcactcctggacctcaaggcattgctggacagcgtggtgtggtgggcctgccc
ggtcagcgaggagagagaggcttccccggccttcccggcccttctggtgaacctggcaaa
caaggtccttctggagcaagtggtgagcgtggcccccctggtcccataggcccccctgga
ttggctggaccccctggcgagtctggacgtgagggatctcctggtgcggaaggctccccc
ggacgagatggttctcctggccccaagggtgaccgcggtgagaccggcccttctggaccc
actggtgctcctggtgctcctggtgcccctggccctgttggccctgctggcaagaatggc
gaccgtggcgagactggtcctgctggtcctgctggcccgatcggccccgttggtgctcgt
ggtcccactggaccccaaggtccacgtggtgacaagggtgagacaggcgaacagggtgac
agaggcataaagggtcaccgtggcttctctggtctccagggtccccctggtcctcctggc
tctcctggtgaacaaggtccttctggagcttctggtcctgctggtccccgaggtcccccc
ggctctgctggttctcctggcaaagacggactcaacggtctcccaggccccatcggcccc
cctggtcctcgtggtcgcactggtgatgctggtcctgttggtccccctggccctcctgga
ccccctgggccccccggtcctcccagcggcggtttcgacttcagcttcctgccccagcca
cctcaagagaaggctcatgatggcggccgctactaccgggccgatgatgccaacgtggtc
cgtgaccgtgacctcgaggtggacaccaccctcaagagcctgagccagcagatcgagaac
atccggagccctgaaggaagccgcaagaacccagcccgcacctgccgcgacctcaagatg
tgccactccgactggaagagcggagaatactggattgaccccaaccaaggatgcaacctg
gatgccatcaaggtcttctgcaacatggagacaggcgagacctgcgtgtaccccactcag
cctcatgtggcccagaagaactggtacatcagcaagaaccccaaggacaagaggcacgtc
tggtacggcgagagcatgactgacggattccagttcgagtatggtggccagggctccgat
cctgccgatgtggccatccagctgacgttcctgcgcctgatgtccaccgaggcttcccag
aacatcacctaccactgcaagaacagcgtggcctacatggaccagcagactggcaacctc
aagaaggccctgctcctccagggctccaacgagattgagatccgggccgagggcaacagc
cgcttcacctacagcgtcacctacgacggttgcacgagtcacaccggagcctggggcaag
acagtgatcgaatacaaaaccaccaagacctcccgcttgcccatcatcgatgtggcacca
ttggacgttggcgccccagaccaggaattcggcatggatgttggccctgtctgcttcttg
taa
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