Nicotiana sylvestris (wood tobacco): 104225674
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Entry
104225674 CDS
T05026
Name
(RefSeq) SNF2 domain-containing protein CLASSY 1-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
104225674
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
nsy03400
]
104225674
DNA repair and recombination proteins [BR:
nsy03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
104225674
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
SAWADEE
Motif
Other DBs
NCBI-GeneID:
104225674
NCBI-ProteinID:
XP_009775827
UniProt:
A0A1U7W721
LinkDB
All DBs
Position
Unknown
AA seq
1285 aa
AA seq
DB search
MKRQLHYNAHPIDPHPFEAFWYGSWHAVERLRVSVGTITTHVLVNEEVIEENIPVTDLRI
RSRKATLSDCACFLRPGLDVCVLSIPYQAEDSDDEKDVKPVWIDAKIRSIERKPHELTCT
CQFYVSVYVTQGPPPIVKKALSKEINMLHIDQIAILQRLEPKPCEDKHYRWSSSEDCNSL
QNFKLFIGKFSSDLTWLVAASVLKEATFDVRSIHNQIVYEIVDDDLDKEPNLNLLSYSVN
FKLENGVSTTTVVQFSRDIPVVNSTSDASEAGPLILYDPMGPRRSKRRFVQPERYYGCDD
DLTDFDVEMTRLVGGRRKVEYEELPLALSIQADHAYKNGEIEENIRSYERKLFGGNIRPQ
EKKSSESSAGWRNALKSDINKLADEKSVTADSQHPLAIVPLPPVGNDLIGDEHVTLDVEV
PEDVSAEIGEIVSRYIYFNGSSTSHNRNTSRMNFTKPEARRWGQVKISKLKFMGLDRRHG
GLGSHKKYKRNTSKKDSIYDIRSFKKGAVAANVYKELIRRCMANIDATLNKEQPPIIDQW
KEFQSTKSGHRESAENVSVNKEEEISEIDMLWKEMELALASCYLLDDSEDSHVQYASDVR
IGAEIRGEVCRHDYRLNEEIGIICRLCGFVSTEIKDVPPPFMPSANYSSSKEQRTEEATY
HKQDEDGLDSLSIPASSNAPSSSGEGEGNVWALIPDLRNKLRVHQKRAFEFLWKNIAGSV
VPAEMEPESKKRGGCVISHTPGAGKTLLIIAFLVSYLKLFPGSRPLVLAPKTTLYTWYKE
VLKWKIPVPVYQIHGGQTYKGEVLREKMKLCPGLPRNQDVMHVLDCLEKMQMWLSQPSVL
LMGYTSFLTLTREDSPYAHRKYMAQVLTQCPGLLILDEGHNPRSTKSRLRKGLMKVNTRL
RILLSGTLFQNNFGEYFNTLTLARPIFVDEVLKELDPKYKKKNKGASRFSLENRARKMFI
DKISSVIDSDIPKKRKEGLNILKKLTGGFIDVYDGGSSDRLPGLQCYTLMMKSTTLQQEI
LVKLQNQRPIYKGFPLELELLITLGAIHPWLIRTTACSSQYFKEEELEALQQFKFDLKLG
SKVKFVMSLIPRCLLRKEKVLIFCHNIAPINLFLEIFERFYGWRKGIEALVLQGDIELFQ
RGRIMDQFEEPGGPSKVMLASITTCAEGISLTAASRVILLDSEWNPSKSKQAIARAFRPG
QDKVVYVYQLLATGTLEEEKYKRTTWKEWVSSMIFSEDLVEDPSHWQAPKIEDELLREIV
EEDRATLFHAIMKNEKASNMGSLQE
NT seq
3858 nt
NT seq
+upstream
nt +downstream
nt
atgaagaggcaattacattacaatgcccatccgattgatccacacccttttgaggccttc
tggtacggctcttggcatgctgtggagcgcctaagggtaagtgtagggaccatcactact
catgttctagttaatgaggaggtgattgaggagaatattccggtaacagatcttcgaata
aggtctagaaaagctactttatctgattgtgcctgctttttacgacccggacttgatgtt
tgtgtgctttcaatcccttaccaagcagaagattcagatgatgagaaagatgtcaagcct
gtatggattgatgcaaaaataagatcaatagagaggaagcctcatgagctcacttgtact
tgtcaattttatgtcagcgtttatgtcactcaaggacctcctcccattgttaagaaagcc
ctaagtaaagagataaacatgctgcacattgatcagattgccattctccaaagacttgaa
cctaaaccttgtgaagacaaacattatcgctggagttcttctgaggactgcaattcgttg
cagaattttaaactatttattggaaaattctcctctgacctcacatggttagtggctgca
tcggttctgaaagaagctacatttgatgtgagatcgatacacaaccagattgtctatgag
attgtggatgatgatcttgacaaagaaccaaatctgaacctactttcttactctgtgaat
ttcaagttagaaaacggagtttcaacaaccactgttgttcaattcagtagggatatccct
gtcgtaaattctaccagtgacgcaagtgaagctgggcctctgattctgtatgaccctatg
ggcccacgaaggtcaaagcgtcgatttgtgcagccagagcgttactatggatgtgatgat
gatttgacagattttgatgttgagatgacacggttagttgggggtaggagaaaagtggag
tatgaagaactaccacttgcactatctattcaagctgatcatgcttacaagaatggtgaa
attgaagaaaatatcaggtcttatgagagaaagttgtttggaggaaatattagacctcaa
gagaagaagtcctctgaaagttcagctggatggagaaacgcactcaaatcagatataaat
aagcttgcagacgaaaaatcagttacagctgacagtcaacatccacttgctattgttccc
ttgcctcctgtgggaaatgatttgattggcgatgaacatgttacacttgatgtcgaagtt
cctgaagatgtgtcagcagagattggtgaaatagtttccagatacatttatttcaatggc
tcttcaacatcgcataataggaacacttctaggatgaacttcacaaaaccagaagcaaga
cgctgggggcaagtcaaaatttctaagttaaaattcatgggacttgatcgtagacatggg
gggttaggttcacataagaagtacaaaagaaatacctcaaagaaggacagtatttatgat
ataagatcatttaaaaagggtgctgtagcggctaacgtgtacaaggagttgataaggagg
tgcatggcaaacattgatgccacccttaataaggaacaaccaccaataattgatcaatgg
aaagagtttcagtcaacaaaatctggccatagagagtccgctgagaatgtctcagtgaat
aaggaggaggagatttcagaaattgatatgttatggaaggagatggaactagccttggcg
tcatgttatcttcttgatgacagtgaggattcccatgttcaatatgcaagtgatgtcagg
ataggagctgaaatacgtggagaagtttgtcgacatgattatcgacttaatgaagaaatc
ggaattatttgccggttatgtggatttgttagcaccgaaataaaggatgttccaccaccc
tttatgccttctgcaaactacagttcaagcaaggaacaaagaactgaagaagctacatat
cacaagcaggatgaagatggccttgatagtttgtccattcctgcttcttccaatgcacct
tcatcatcgggagaaggggaaggcaatgtctgggctttgatacctgatcttagaaataaa
ttacgggtacaccaaaagagagcctttgaatttctgtggaaaaatattgctggatccgta
gtacctgctgaaatggaaccagaaagcaaaaagagaggtggctgtgttatttctcatact
ccaggagctgggaaaaccttgctaattattgccttccttgtaagctacctgaagttattt
cctgggtcacggccattggtccttgctccaaagacaacactctacacctggtacaaagaa
gtacttaagtggaaaattcctgtgccagtctaccaaattcatggtggtcaaacctataag
ggagaggttttgagggaaaagatgaaattgtgtcctggtcttcctcgcaaccaggatgtc
atgcatgtcttggactgccttgaaaaaatgcagatgtggctttcacaacccagtgttctc
cttatgggctatacctcctttttaacactgacgcgggaagattcaccttatgcacatagg
aaatatatggcccaggtattgacgcagtgtccagggctcctaatacttgatgaagggcac
aatccgagaagtacaaaatccaggttaagaaagggtctaatgaaggtcaatacacggctt
aggattttgctttctggtacactattccagaataattttggggagtatttcaacacactt
accttagcaaggccaatctttgttgatgaggtcctgaaggagctggatcccaagtacaag
aagaaaaacaaaggtgcatctcgcttttcattggaaaatcgagcgagaaagatgtttatt
gataaaatctcaagtgtcattgattcagacatccccaagaaaaggaaagaaggcctaaac
atattgaagaaactaacaggtggattcatagatgtgtatgacggtggatcatccgataga
ctccctggtttacaatgctacaccttgatgatgaaatcaaccactcttcagcaagaaatt
ttggtgaagcttcaaaatcaaaggcccatctacaaaggatttccactggagttggagctg
ttgattacccttggcgcaatccatccttggttgatccgaacgacagcatgttctagccag
tacttcaaggaagaggagctcgaggctcttcagcaattcaagtttgacctgaagttgggt
tcgaaagtcaaattcgtaatgagcctaatacctcgttgtctcctcaggaaagaaaaggtt
ttgatattctgccacaatattgctccgattaatcttttcctggagatatttgagaggttc
tatggttggagaaagggcatcgaagcactggtgcttcaaggtgacattgagcttttccaa
agaggaaggataatggatcagtttgaggagccaggaggaccatcgaaggtaatgttggca
tccattacaacttgtgcagaaggcattagcttgacagcggcatcacgtgtaatattactg
gattcagagtggaatccttcaaagagcaagcaagcaattgcacgggcttttcggcctggt
caggacaaagttgtttatgtctaccagctcctagccacaggcacactggaagaggagaaa
tacaaaagaactacatggaaagagtgggtttcaagcatgatattcagtgaagaccttgtg
gaggacccttctcactggcaagcacccaaaattgaagatgaattgttgagagagattgtc
gaggaggatcgagctacattattccatgccattatgaaaaatgagaaggcttctaatatg
ggaagtctgcaggaataa
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