Nicotiana sylvestris (wood tobacco): 104238888
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Entry
104238888 CDS
T05026
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
nsy
Nicotiana sylvestris (wood tobacco)
Pathway
nsy03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
nsy00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
104238888
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
nsy03041
]
104238888
Enzymes [BR:
nsy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
104238888
Spliceosome [BR:
nsy03041
]
Complex A
U2 snRNP components
U2 related factors
104238888
Complex B
104238888
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
104238888
NCBI-ProteinID:
XP_009791688
UniProt:
A0A1U7XYS9
LinkDB
All DBs
Position
Unknown
AA seq
1142 aa
AA seq
DB search
MEEKHKSKREEESKKRHRDSKEDRGDRDKHRDRDHHRSSSDKKDREKSSRYDREKSADEK
YGERDRDRDRDRDRDRAKHKDRHRDKEREKSKGRDDNDDERPSRDKVKEREKKDKEDREN
REKERERDREKEREKKRDRERREKEKEKEKERREREREKERNREKDRHREVENGSDDEAD
AKDRDRKRRKRNDDDHKERERERDRERSSKSNNKLREDSTDEVLAEEKNEKSREEDFAEE
QRKLEDEMEKRRRRVQEWQELKRKKEESEREQLGVSAGAEEEPKLGKTWTLEGESDDEDA
EGKHGMDIDVDDNDKAMDDDDGTDKVVSSPVIQNGNDELMEDDDDIDPLDAFMNSMVLPE
VEKLNNAVVNNLGDGNSKNGTDKGEEEQQPKKMSVKKTMGRIIPGEDSDSDYGNVENDGD
DPLEEEDDEEFMKRVKKTKAEKLSIVDHSKIDYPPFRKNFYIEVKEISRMSAEEVSAYRK
QLELKIHGKDVPKPIRTWHQTGLSSKMLDTIKKLNYEKPMSIQAQALPVIMSGRDCIGIA
KTGSGKTLAFVLPMLRHIKDQPPLMSGDGPIGLIMAPTRELVQQIHSDIKKFTKAMGLIC
VPVYGGSGVAQQISELKRGAEIVVCTPGRMIDILCTSGGKITNLRRVTYLVMDEADRMFD
MGFEPQITRIVQNTRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDITQL
VEVRPEGERFLRLLELLGEWYEKGKILIFVHTQEKCDALFRDLIKHGYPCLSLHGAKDQT
DRESTISDFKSNVCNLLIATSIAARGLDVKELELVINYDVPNHYEDYVHRVGRTGRAGRK
GCAITFLSEDDARYAPDLLKALQLSEQVVPDDLKALADSFMAKVNQGLEQAHGTGYGGSG
FKFNEEEDEVRRAAKKAQAKEYGFEEDKSDSEDEDDGIRKAGGDLSQQAALAQAAALVAA
SKASMASAATPVSAGQLLPNGGLPVALPGVLGINIPGATAAIAGNGLPVGSNDVTARATA
LAAALNLQHNLAKIQADAMPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTR
GQYVPPGKAPGLLDRKLYLFIEGPTEQSVKRAKAELKRVLEDITMQASSLPGSAQPGRYS
VV
NT seq
3429 nt
NT seq
+upstream
nt +downstream
nt
atggaagagaagcacaagtcgaagagagaggaggaatcgaagaagcgtcaccgtgatagt
aaggaggatcgaggagatcgcgacaagcatagggacagagaccaccatcgttcctcatca
gataagaaggatcgagagaaaagcagccgctatgatagagaaaaaagcgccgatgaaaag
tacggcgagagggatagagatagagatagagatagagatagagatagggcaaagcacaag
gatagacacagggataaggagcgtgaaaaaagcaagggccgtgatgataatgatgatgaa
agacctagtagagataaagttaaagaacgagaaaaaaaggataaggaggatcgtgaaaac
agagagaaggagagggagagggatagagagaaagagagggagaagaagagagatagagag
agaagggagaaagagaaagagaaagaaaaggagaggagggaaagggagagagaaaaggag
cggaacagggaaaaggatagacaccgtgaagtagaaaatggtagcgatgatgaagctgat
gccaaggatcgagatagaaagaggcgaaagagaaatgatgatgatcataaggagagggag
agggagagggatcgtgaaaggagtagcaaatccaacaacaagctcagggaagatagcact
gatgaagtattagcagaagaaaagaatgagaagagtcgagaagaggattttgctgaggag
caaaggaaattagaggatgagatggagaagcgaaggaggagagttcaagaatggcaagag
ctaaagagaaaaaaagaggagtcagaaagggagcagcttggtgtttctgcaggtgctgaa
gaagaacctaaattgggtaaaacttggactttggagggagaatctgacgatgaagatgct
gaggggaaacatgggatggatattgatgtggatgataatgacaaggcgatggatgatgat
gatggtacggacaaggtggttagttcccctgtgattcaaaatggcaatgatgagttaatg
gaggacgatgatgatattgacccgttggatgcttttatgaactctatggttttgcctgaa
gttgagaagcttaataatgccgtagtcaataatcttggtgatggaaattctaaaaatggt
actgataaaggcgaagaagaacaacagcctaagaagatgagtgtgaagaagactatggga
agaattatccctggtgaagattcggattcggattatgggaacgttgagaatgatggtgat
gatcctttggaggaagaggatgatgaagagtttatgaaacgcgtgaagaaaaccaaggcc
gagaaactatcaatagttgatcattcgaaaattgactatcctccttttagaaagaatttt
tacatagaagttaaggagatttcaagaatgagtgctgaagaggtttctgcttacaggaaa
caactggaattgaagatccatggaaaggatgttcctaaaccgatcagaacgtggcaccag
acgggactgtcctccaagatgctagacactataaagaaactgaattatgagaagcccatg
tctattcaggctcaggctctgccggtaattatgagcggccgagattgcattgggattgct
aagacgggttctggtaaaactctggcatttgtattaccaatgctaagacatattaaggac
cagcctcctctgatgtctggagatggtcctattgggctgataatggcccctacgagagag
cttgtgcagcaaattcatagtgatattaagaagttcactaaggcgatgggtctcatttgt
gtgcccgtgtatggaggctctggggttgctcagcaaattagtgaattgaagcgaggagct
gaaattgttgtgtgcactccaggcaggatgattgatatactttgcacaagtggtggaaag
attacgaatctgcgaagagtcacttacttggtcatggatgaagctgatcgaatgtttgac
atgggatttgaacctcagatcacaagaattgtccaaaacacacggcctgaccgtcaaaca
gtcctgttctctgcaacttttcctcgccaggttgaaatattagctcgtaaagtattgaac
aaacctgttgaaatacaggtaggtggtaggagtgttgtgaacaaggatataacacaactg
gttgaggtgaggccagaaggtgaaagattccttcggctccttgaattacttggtgaatgg
tatgaaaaaggaaaaattttgatatttgttcacacacaggagaaatgtgatgctttattt
agggatttgattaagcatggttatccctgcctctcccttcatggggcaaaggatcagact
gatcgcgagtccaccatatccgactttaaaagtaatgtgtgtaatttgttgattgctact
agtatagcagccaggggcttagatgtcaaggagcttgaactggtaatcaattatgatgtt
ccgaatcattatgaggactatgttcatcgtgttggtcggactggtcgggctggtaggaaa
ggttgtgccatcacattcttatctgaagacgatgcaagatatgcacctgaccttttgaaa
gctttacaactgtcagaacaagttgttccagatgacctgaaagctcttgcagatagtttc
atggcgaaggtgaatcagggacttgagcaagcacatgggactggttatggtggtagtggt
tttaaatttaatgaagaagaggatgaagtgagaagagcagccaaaaaagcacaggcaaaa
gaatatggatttgaggaagataaatcagattcagaggatgaagatgatggaattagaaaa
gcaggcggcgacctctctcagcaggctgcccttgctcaggctgctgctcttgttgctgct
tccaaagcgagtatggcttcagcggcaactccagtttcagctggtcagcttcttcccaat
ggtggcttgcctgttgcattgcctggtgtacttggtattaatataccaggtgcaacagca
gctattgctggaaatggactgccagttggctctaatgatgtgacagccagagcaacagca
ttggcagctgccttgaacttgcagcacaatttagcgaagattcaggccgatgcaatgcct
gaacattatgaagcggaattagagataaatgatttccctcaaaatgctcgctggaaggtg
acacacaaggagactttgggtcctatttctgaatggacgggagctgccatcaccactcga
ggacagtatgttccacctggcaaggcaccagggcttctggacaggaagctgtacttgttc
attgagggccccacggaacaatctgtcaagagagcaaaagcagaactgaaacgtgttttg
gaggacattaccatgcaagcatcatctcttcctggttcggctcagccaggcagatactca
gttgtataa
DBGET
integrated database retrieval system
