Nicotiana tabacum (common tobacco): 107828011 Help Entry 107828011         CDS       T04643                                  Name (RefSeq) DNA ligase 1-like   KO K10747   DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] Organism nta  Nicotiana tabacum (common tobacco) Pathway nta03030   DNA replication nta03410   Base excision repair nta03420   Nucleotide excision repair nta03430   Mismatch repair Brite KEGG Orthology (KO) [BR:nta00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     107828011    03410 Base excision repair     107828011    03420 Nucleotide excision repair     107828011    03430 Mismatch repair     107828011  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:nta03032]     107828011    03400 DNA repair and recombination proteins [BR:nta03400]     107828011 Enzymes [BR:nta01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      107828011     6.5.1.6  DNA ligase (ATP or NAD+)      107828011     6.5.1.7  DNA ligase (ATP, ADP or GTP)      107828011 DNA replication proteins [BR:nta03032]  Eukaryotic type   DNA Replication Elongation Factors    Other elongation factors     107828011  Prokaryotic type    Elongation factors (archaeal)     Other elongation factors      107828011 DNA repair and recombination proteins [BR:nta03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      107828011    NER (nucleotide excision repair)     Other NER factors      107828011    MMR (mismatch excision repair)     Other MMR factors      107828011 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase Motif Other DBs NCBI-GeneID:  107828011 NCBI-ProteinID:  XP_016510748 UniProt:  A0A1S4DBM1 LinkDB All DBs Position Un AA seq 775 aa AA seqDB search MLPLRSCCHHFAQPSLYNRLHFSLKPSSLFLLISPLNPLKTIRPLFLNPNSRTMSTRRSA FDVLMANSKKKTPTQDSSPKKRKTPEAETSNKTAILENHNQDSILKPNEDTHLVNESKSE EVLVKKQKMISPDESVTELKKKAANFDPRKAAYWRDGERVPFIFVVKAFDAISKESGRIV ITEIVTNMLRTVIETTPEDLLPVVYLSANKIAAAHDGLELGIGDASIIKALAEACGTKEA HIKKQYKELGDLGLVAKASRSSQPLMRKPEALTVAKVFDTFRIIAKESGKDSQEKKKNYI KSLLVAATDCEPQYLIRLLQTKLRIGLAEQTLLVALAQASVYSDKHSSPPAGVDSPLEEA AKIVKQVYSVIPVYEKVVPAILADGVWKLSETCSFSPGVPVGPMLAKPTKGVSEILDKFQ DMEFTCEYKYDGERAQIHYLEDGSVEIYSRNAERNTGKFPDVVAAISRLKKSSATSFVLD CELVAYDREKQKILPFQILSTRARKNVVMNDIKVNVCIYAFDILYLNGQPLLQEQLNVRR EHLYKSFEEEPGYFQFATAVTSNDLEEITKFLEAAVNDSNEGLIIKTLSRDATYEPSKRS NNWLKLKKDYMESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTG FSEAMLEERSSSLRSKVIPKPKSYYRYAETINPDVWFEPTEVWEVKAADLTISPVHRAAQ GIVDRDKGISLRFPRLIRVREDKNPEQASSADMVADMFNAQKHNHKNDKDDNEED NT seq 2328 nt NT seq  +upstreamnt  +downstreamnt atgttgccgttgcgctcatgctgtcaccatttcgctcaaccttctctttacaaccgtctc catttctcccttaaaccctcttcactctttctccttatatccccccttaatccccttaaa accattagaccccttttcttaaaccctaattcaagaaccatgtcaactcgtcgctctgct ttcgatgtccttatggcaaattccaagaaaaaaaccccaacccaagattcctcacccaag aaacgcaaaaccccagaagctgaaacttccaataaaactgctattcttgaaaatcataat caagattcaattttgaagccaaatgaggacacccatttggttaatgagtcgaaaagtgaa gaggttctggtgaagaaacagaagatgataagtccagatgagagtgtgactgagctgaag aaaaaagctgccaactttgatccaagaaaggctgcatattggagggatggtgagagagtg ccgttcatttttgtagttaaggcgttcgacgcgatttcgaaggagtcaggaagaattgta attactgaaattgtgactaatatgttgaggactgtgattgagacgacgcccgaggatttg ttgcctgttgtgtacctttcggctaacaagattgcagctgcacatgatggtttggagctt ggtattggcgatgcttcgataatcaaggcacttgctgaagcttgtggcactaaagaagca catattaagaagcaatataaggagcttggagacttgggccttgttgcaaaagcaagccgt tcatcacagcctctgatgcgtaaaccagaagcattgactgttgccaaagtttttgacacg tttcgaattattgccaaggaatctgggaaggatagtcaggaaaagaaaaagaattacatt aaatcactacttgttgcagctactgattgtgaaccccaatatttgattcgtctcctccag acaaagctacgcattggtttggctgaacaaacactgttagtcgcacttgctcaagcttct gtgtactcggacaagcattcatcacctcctgcaggtgtagattctcctttggaagaggct gccaagattgtaaagcaagtgtactctgtaattccggtttatgaaaaagttgttcctgct attctagctgatggtgtttggaagctttcagaaacatgcagcttctcacctggtgttccg gttggacctatgctagctaagccaaccaaaggagtatctgaaattcttgataagtttcag gatatggagttcacatgtgaatacaagtatgacggtgaacgtgctcagatacattacttg gaagatggttctgttgagatatacagccgaaatgcagaaagaaatactggaaagtttcct gacgttgttgctgctatctcaagattgaaaaaatcttctgcaacatcatttgttcttgat tgtgaactggtcgcatatgaccgtgagaaacagaagatcctgccctttcagatcctcagt acgcgtgctcgtaagaatgttgtcatgaatgatatcaaggtcaacgtttgcatatatgct tttgatatcttgtatcttaatggacaacctcttcttcaagagcagcttaacgtgcgcaga gagcatctttacaagtcatttgaagaagaacccggatatttccaatttgctacagctgta acctcaaacgatcttgaggaaataacaaaatttcttgaagctgcagtgaatgacagtaat gagggattgattatcaagacgctaagtagagatgctacatatgagccttcaaagcggtca aataactggctaaaactgaagaaggactacatggaaagtattggtgactcactggatttg gtaccaattgctgcttttcatggtcgggggaaacgtactggtgtttacggagcctttctc ctagcttgttatgatagcaacaacgaggagttccagagcatctgtaaaattggaactgga ttttccgaagcaatgcttgaagaacgctcttccagccttcgttccaaagttattccaaaa ccaaagtcatattacaggtatgcggaaaccatcaatccagatgtatggtttgaacctact gaggtatgggaagtgaaagcagctgatcttaccatcagcccagtccaccgtgctgcgcaa ggtatcgtggatcgcgataagggaatttctttaagatttccacgtttgattcgtgtacga gaagacaagaatcctgagcaggcctcatcagcagacatggttgcggatatgtttaatgca cagaagcacaatcataaaaatgataaggatgataatgaagaagactaa

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