Caenibius tardaugens: EGO55_10390
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Entry
EGO55_10390 CDS
T05741
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ntd
Caenibius tardaugens
Pathway
ntd03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ntd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
EGO55_10390 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ntd03400
]
EGO55_10390 (ligD)
Enzymes [BR:
ntd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
EGO55_10390 (ligD)
DNA repair and recombination proteins [BR:
ntd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
EGO55_10390 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AZI36313
UniProt:
U3A819
LinkDB
All DBs
Position
complement(2266013..2268541)
Genome browser
AA seq
842 aa
AA seq
DB search
MASADPLSRYNEKRDFTRTSEPAGKTGRSTDGNLFIVQKHGATRLHWDFRLEADGVLKSW
AITKGPSTDPDDKRLAVRTEDHPLSYARFEGTIPKGEYGGGTVMLWDQGTWEPVEGKSAK
DIEKGHLHFRLHGERMKGEWLLVRMRPRPGEKRENWLLRKIADAYASNSADLVEQGLTSV
LTGRSMAQIAADKAGTHPLQNKKGKDFDAAMKKAARHNAGLRPKTARTRKDASSALPTFQ
PVQLATLVDTIPTGNGWMHEIKFDGYRALVAASSSKVRIYTRSSLDWTDKFEPLAQQIAA
LDLPPCLIDGEIVAYDSQGNPDFSALQNVLKRGHGQQQEKDHLAFHAFDLLLQDGLDLKP
LPAIERKERLEALLADSRPPVHVADHVIGAGEKLFSAMCVAGQEGIIAKRVDAPYRGERT
RNWVKVKCTRRQEFVIIGWTTSGTRGRAFKSLLLAQREGDVLVYKGKVGTGFNSATMDDL
ANRIATLTRKTAPAPVPRAEARGAHWVTPKLVAEVAFAEFTAEGRVRHGSFIALRTDKTA
QEVKPERALAAPQETAAIRITHPDRVIFPETGETKGDLATYYESIAPLMLPFAAHRPISL
VRCPQGRARKCFFQKHDSGSFGPHVSHVPIAEKHGGVEDYLYVTDTAGLLACVQMGTIEF
HGWCASTADVEHPDRMIFDLDPDEGLDFAEVKRAARQIRQHLADLGLVSFAMLSGGKGVH
VVLPLTPGHDWAVHKDFAKRFAEALSIAEPERFTATMSKAKRKGRIFIDWLRNQRGGTAI
LPYSARARTGAPIAVPVGWDELKDIETANSFSIRDAADLLERSRSKPLRGWGFAAQSLPE
TI
NT seq
2529 nt
NT seq
+upstream
nt +downstream
nt
atggccagcgccgatccgctttcgcgctacaacgagaagcgggatttcacgcgtacatcc
gaacccgcaggcaagaccgggcgcagcacggatggcaaccttttcatcgttcaaaagcat
ggcgccacgcgccttcattgggattttcgtctggaggcagacggcgtgctcaagagttgg
gccatcacgaaaggcccaagcaccgaccccgacgacaagcgcctcgcggtgcgtaccgag
gatcacccgctctcttacgcgcggttcgaagggacaatacccaagggcgaatatggcggc
ggcaccgtcatgctctgggatcagggcacatgggaacccgtggagggcaagagtgcgaag
gatatcgagaaaggccatctccacttccgcctccatggcgagcgcatgaaaggcgaatgg
ttgctggtgcggatgcgcccgcgccccggcgaaaaacgcgagaactggctgcttcgtaaa
atcgctgatgcctatgccagcaattccgcagatctggtcgagcagggtctcaccagcgtg
ctgacggggcggtcgatggcgcagatcgcggcggataaagcgggaacgcaccccctgcaa
aacaagaaaggcaaggatttcgacgcggccatgaagaaggcggcgcgccacaatgccggc
ctgcgccctaaaacagcccgcaccagaaaagatgcatcctccgcactaccgacattccag
ccggttcagcttgccacgctggtcgataccatacccaccggcaatggctggatgcatgaa
atcaagttcgacggctatcgcgcgctggtggccgccagcagcagcaaggtgcgcatctac
acacgttcaagcctcgactggacggacaagttcgaaccgcttgcccaacagatagcggcg
ctcgacctgcccccctgcctgatcgacggcgagatcgtcgcttacgacagtcaaggcaat
cccgatttctccgcccttcagaacgtgctgaaacgcggccacggccagcaacaggaaaaa
gaccacctggcttttcacgctttcgatctgctgctgcaggatgggctggacctcaaaccc
cttcccgccatcgaacgcaaggaacggctcgaagccctgcttgcagacagccgcccgcct
gttcatgttgcagaccatgtaatcggcgcaggagaaaagctgttctccgccatgtgcgtg
gccgggcaggaggggatcatcgccaagcgcgtggatgcaccctatcggggagagcgcacc
cgcaactgggtcaaggtcaaatgcacccggcgtcaggaattcgtcatcatcggttggacg
acgagcggtacgcgcggccgggcgttcaaatcgttgctgctggcccagcgtgaaggcgat
gtgctcgtgtacaagggcaaagtcgggacgggtttcaacagcgcgacgatggacgatctt
gccaaccggatagcaacgctgacccgcaagacggccccggcccctgtgccccgcgccgag
gcgcggggtgcgcactgggtgacgccgaaactggtcgccgaggtcgccttcgccgaattc
accgccgagggccgcgtgcgccacggcagcttcatcgcgctgcgcaccgacaagaccgca
caggaagtcaagccggaacgggcgcttgccgccccccaagagacggccgcgatcaggatc
acccatcccgaccgcgtgattttcccggaaaccggcgaaaccaaaggtgatctcgccacc
tattatgagagcatcgcaccgctgatgttaccttttgcagcccatcgaccgatcagcctg
gtacgttgcccgcaaggccgtgcacgcaaatgttttttccagaaacatgacagcggatcg
ttcggcccgcatgtgagccatgtaccgattgccgagaagcatggtggcgttgaagattat
ctctacgtcaccgacacggcgggccttctggcctgtgtccagatgggcacgattgagttc
cacggctggtgcgcgagtaccgcagatgttgagcatcccgatcgcatgatcttcgatctt
gatcccgacgaaggactggatttcgcagaggtgaagcgggcggcacgccaaatccgtcag
catctcgccgatcttggccttgtcagcttcgcgatgctctcgggcggcaaaggtgtacat
gtagtgctcccgcttacgcccgggcacgactgggccgtgcacaaggatttcgcgaagcgc
ttcgccgaggcgcttagcatcgccgagccggaacgtttcaccgcgacaatgagcaaggcc
aaacgcaagggccgcatcttcatcgactggcttcgtaaccagcgcggcggcactgctatt
ctgccctactccgcccgcgctcggacgggggcccccatcgcggtgccggttgggtgggat
gaactgaaggacatcgaaacggcgaacagcttcagcattagggacgcggccgacctgctg
gaacggtctcgcagcaagcccttgagaggctggggtttcgcggcccaaagcttgcccgaa
acaatataa
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