Nasonia vitripennis (jewel wasp): 100116475
Help
Entry
100116475 CDS
T01081
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
nvi
Nasonia vitripennis (jewel wasp)
Pathway
nvi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nvi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
100116475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nvi03019
]
100116475
03041 Spliceosome [BR:
nvi03041
]
100116475
03009 Ribosome biogenesis [BR:
nvi03009
]
100116475
03016 Transfer RNA biogenesis [BR:
nvi03016
]
100116475
Enzymes [BR:
nvi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
100116475
Messenger RNA biogenesis [BR:
nvi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
100116475
Spliceosome [BR:
nvi03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
100116475
Complex C
U4/U6.U5 tri-SnRNP related factors
100116475
Ribosome biogenesis [BR:
nvi03009
]
Eukaryotic type
Pre-60S particles
Helicases
100116475
Transfer RNA biogenesis [BR:
nvi03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
100116475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
ResIII
Helicase_C
Prp19
nSTAND3
ATPase_2
Death_3
Motif
Other DBs
NCBI-GeneID:
100116475
NCBI-ProteinID:
XP_001600961
NASONIABASE:
NV17547
UniProt:
A0A7M7G698
LinkDB
All DBs
Position
3:10630664..10634933
Genome browser
AA seq
1001 aa
AA seq
DB search
MDLGDDLFDAFEENNDAVVEISRPVSVKRENDEDAKDEPTVKKLKTEAILEDINLNEIES
RITVHTIETIESCTHEVAVPPDQEYVPLENATTKPAKEYKFVLDPFQKEAILCIENNQSV
LVSAHTSAGKTVVAEYAIACSLRDKQRVIYTTPIKALSNQKYREFYEEFKDVGLVTGDVT
INPTASILIMTTEILRNMLYRGSEVMREVGWVIFDEIHYMRDKERGVVWEETLILLPDNV
HYVFLSATIPNARQFAEWVAHLHHQPCHVVYTDYRPTPLQHYIFPVGGDGIHLVVDEHGQ
FKEDNFNRAMACLQGDAAKGDTKGRKGGMHKTNAGQTNIFKVVKMIMERNFAPVIIFSFS
KKDCEVYAMQLAKLDLNTAEEKKLVDEVFNNAMDVLNEDDRKLPQVENVLPLLRRGIGIH
HGGLLPILKETIEILFGEGLIKALFATETFAMGLNMPARTVLFTAPRKFDGKDFRWITSG
EYIQMSGRAGRRGLDDKGIVILMIDEQVSPSVGKEIVQGKADPINSAFHLTYNMVLNLLR
VEEINPEYMLERSFYQFQNQAAIPELYNQVKTLQNEYDEIQFDKYTLMSAYHDIREQLDR
LSLDFRAFLTKPEYLLPFLQPGRMIKVKNEKESFDWGIIVNFKKKNPKNPEKEKTSIIVD
ILLHVAKDSTEAAPKPCPEGEEGEVEVVPVLHTLISQISSLRLYYPKDLRPADNRKSVLK
TIQEVKKRFPDGPPLLNPITDMKIEDPGFKDIINRIEVLEERLYAHPLHKDPNLTDLYQK
FLIKEEIGKKLINAKTELKRAKSVLQMDELKCRKRVLRRLAYCTAADVIELKGRVACELN
GADELLMTEMIFNGLFNALTVPQMTALISCFVCDDKSSETPKSIDELSGPLRQMQDIARR
IAKVSTEANLELDEDSYVEKFKPFLMDVVYAWCKGATFLQICKMTDIFEGSIIRCMRRLE
EVLRQLLQAAKNIGNTDLENKFSEAIKLIKRDIVFAASLYL
NT seq
3006 nt
NT seq
+upstream
nt +downstream
nt
atggatttgggcgacgatttgttcgacgcattcgaagaaaacaacgacgcggtcgtcgaa
atcagtagacccgtaagcgtgaaacgggaaaatgacgaggacgcaaaagatgagcctacc
gttaaaaagttgaaaacagaagctattcttgaagatatcaacttaaatgagattgaatcg
agaataacggttcataccattgaaactatagaatcatgtacacacgaggttgcagtgcca
ccagatcaggagtatgttccacttgaaaatgcaacaacaaaaccagccaaagagtacaaa
tttgtgttggatccttttcaaaaggaagccattttatgtattgaaaataatcagtcagtt
ctagtatccgctcatacgtctgcaggaaaaactgtagtagcagagtatgccattgcatgt
tccttgcgcgataagcaaagagtcatctacacaactcctataaaagcccttagtaatcaa
aagtacagagaattctatgaagagtttaaggatgtaggattggttactggtgatgtaaca
atcaatccaactgccagtattctgattatgactacagaaattcttagaaatatgctttac
agaggctctgaggtaatgcgtgaagtaggttgggtaatatttgatgaaattcattatatg
cgtgacaaggaaagaggtgtggtttgggaagaaacattaattttactaccagacaatgtt
cactacgtcttcctgtctgcaactattccaaatgctcggcaatttgctgagtgggtagct
cacttgcatcaccaaccttgccatgttgtctatacagactacagaccgactcccttacaa
cattacatctttccagttggaggagatggaatacatttggttgtagatgaacatggccaa
ttcaaagaagataacttcaacagagcgatggcctgtttgcaaggagatgcagctaaaggt
gatactaaaggtcgtaaaggtggaatgcacaaaaccaatgctggacagacaaacattttc
aaagttgtcaagatgattatggaaagaaattttgctcccgtaattattttcagcttttct
aagaaagactgcgaagtatatgctatgcaacttgcaaagttggatcttaacactgcagaa
gagaaaaaattagtcgatgaagtatttaataacgctatggacgttctcaatgaagacgac
cgaaaattacctcaagtagaaaatgttttaccattgttgagacgtggaatcggcatacat
cacggtggacttcttccaattctaaaggaaactattgaaattttgtttggtgaaggtctg
atcaaagctctttttgcaacagaaacgtttgcaatgggcttaaacatgcctgccagaact
gttttatttactgcgccgcgtaaatttgacggcaaagatttccgatggatcacgtctgga
gagtacatacagatgtctggacgagctggtaggagaggacttgatgataaaggtatagtc
attctgatgatcgacgaacaagttagcccatcagttggaaaagaaatagttcaaggaaaa
gctgatccaattaattctgcttttcatttaacttacaatatggttttgaatttgttgaga
gttgaagaaatcaatcccgaatatatgttagaaaggagtttttatcagttccaaaatcaa
gcagccatacctgaattatataaccaggtcaaaacattacaaaatgaatatgatgaaatc
cagtttgacaaatacactctaatgtccgcctatcacgacataagagaacaattagatcgt
ctgagtctagacttcagagcttttttaacgaaacctgaatatttacttccattccttcag
ccaggaagaatgattaaagtaaaaaacgagaaagagtcatttgattggggtataattgta
aatttcaaaaagaagaatccgaaaaatcctgaaaaagagaaaacgagtattattgtagat
attctacttcatgtagctaaggattctactgaagctgctccaaaaccatgtccagaagga
gaagaaggagaagtagaagttgtacctgttttacatacacttatatcacaaatcagttcc
cttaggctatattatccaaaagacttaaggccagctgataataggaaaagtgtactaaaa
acgatacaagaagtaaagaaacgattcccagatggacctcctttgctgaatcctatcacg
gacatgaaaatcgaagatccaggattcaaagatataattaataggatagaagttttggaa
gagagattatatgctcatccactgcacaaagatcccaacttgactgatttgtaccaaaag
ttcttaataaaagaagaaattggaaagaaattaataaacgctaagacagaattaaagcgc
gctaaatcggttcttcaaatggatgaattaaaatgtcgaaaacgtgtattacgccgatta
gcttattgtacagcagcagatgttatagaactaaaaggtcgtgtggcgtgtgagttaaat
ggagctgatgaattacttatgaccgaaatgatttttaacggtctttttaacgcattgact
gtacctcaaatgactgcattaattagttgtttcgtttgtgatgataaatcgagtgaaact
cctaaaagtattgacgagttgagcggacctttacggcaaatgcaagacatagcgcgaaga
atagcaaaagtatcaacagaggcgaatctagaattagatgaagattcatatgttgagaag
ttcaaaccatttttgatggatgtagtttatgcctggtgcaagggagctacgtttttacaa
atttgcaaaatgacagacattttcgaaggttccataattcgatgtatgcgaagattagag
gaagttcttcgacaacttttgcaagctgcgaaaaatataggcaatacggatcttgaaaat
aaatttagcgaggctattaagttgattaagagggatattgtattcgcagcttcgttatac
ttgtaa
DBGET
integrated database retrieval system
