Nematolebias whitei (Rio pearlfish): 119416098
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Entry
119416098 CDS
T08042
Symbol
smc1b
Name
(RefSeq) structural maintenance of chromosomes protein 1B
KO
K06636
structural maintenance of chromosome 1
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh04110
Cell cycle
nwh04114
Oocyte meiosis
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
119416098 (smc1b)
04114 Oocyte meiosis
119416098 (smc1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
nwh03036
]
119416098 (smc1b)
Chromosome and associated proteins [BR:
nwh03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
119416098 (smc1b)
Meiosis-specific proteins
Cohesin complex and associated proteins
119416098 (smc1b)
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_21
AAA_23
AAA_29
Saposin
SbcC_Walker_B
CATRA-C
Motif
Other DBs
NCBI-GeneID:
119416098
NCBI-ProteinID:
XP_037539213
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All DBs
Position
10:8018933..8041709
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AA seq
1234 aa
AA seq
DB search
MVYLKQINVENFKSWRGKQVIGPFMRFNCIIGTNGSGKSNVMDALSFAMGQRAASLRVKH
LRDLVHGAHIGQPVSGTARVAIRFCDEEDGEMVFSRTITGDSSSYHINDAHVTSATYIEE
LAKIGIVTKAQNYLVFQGEVESIALKDPKEITKMLESISQSKELAADYQKKKEELLMAKE
NTQFHFNQKKSATVERKQVSQEKLEAQKYQALLDDRHQKHLQLSLAELYLNERDIGAISD
TLKERQHSAAAKNSEMVNWEQTVKAHKKEHGRLTREQQHIDKEIRGQEHSLSQARSHYIK
AKVNTSHHIKKAEEMHNAVQKSRKLLAIKEQEVTAGHQEVEELGRTWKNYEKQIQEEGAA
RGRDIELDEDQLERYKELKELAQKQGAVVNQQAEKLHWELRADSEKMSFDLRRKKEVEVA
IRNSQKHLEELENRAEKLEEYTKTCKSSLEDYHQQEESLTAELQHVSQRTKEVNQELGKV
MEELRNARLDSHESKRQQQRRELLEKLCRLFPETLFGRLSDLCSPIHKKYQLAVTKVFGN
NMNAIVVTSEKVARECICFIKEERAEPEMFLPIDYLVVKPLNERLREISGAKMLVDVVQI
NAASGAAQLRKIVQYVCDNALVCETMKDARRVAFDGKERLKTVTLDGTLFKTSGVISGGS
SYLRTKARCWDEKDMLHLKEHRDNLTKELRDLMKLKRKEPDLKRIIAQSQGAQTRLKYST
TDLENLQKKVIPKCHAEISRMESELANADYQIQMQQESLEGKNAEMKKIKHQIDQMEDLV
FSDFCAEIGVDNIREYEQEHLKQQAELDKKRLEFESQCAQLNAQLDFEENQLEQDRKKLR
KMEDTINMEEGTIAELKKEEQKLLEAVEEGQNKLLELKNQLLTKKSQVALAKAELDQKSQ
ELQENNKELVKLQRKVMSAETMLEQKRLARHNLLLACKIQGLPIIMLSGSLNEISEVHLT
TDSESTSATMDIYEREAQLVIDYSELDEEFRSLRDDEETEAFMKKLKESVSSLEEVLLST
TVPNLKALEKINEVKDKLQGVTEAFDASTKAARKCNQEFELVKARRCLLFSQCFEHVSVV
IDQIYKRICRNSSAQAILSAETPDEPYLGGINYNCVAPGKRFMSMDNLSGGEKAIAALAL
LFAIHSFRPAPFFILDEVDAALDNTNIGKVTSFIREESRRNMQIIVISLKEEFFSKSDAL
LGVYSDFDECMLSRILTLDLRLYALDEDDNGTQS
NT seq
3705 nt
NT seq
+upstream
nt +downstream
nt
atggtctacctaaaacaaattaatgttgaaaactttaagtcatggcgtggaaaacaggtt
attggtcccttcatgcggttcaactgtataataggcacaaatggctcagggaagtccaat
gtgatggacgccctgagcttcgctatggggcagcgggccgcctctcttcgggtgaagcac
ctcagagacctggtccacggagcccacatcgggcagccggtgtccggcacagcccgagtg
gccatacgcttctgtgacgaggaggatggagagatggtgttttctcgaacaatcacaggg
gactcttcttcctatcacattaacgatgctcatgttacttctgctacatacatcgaagag
cttgcaaagattggcattgtgaccaaagctcagaactatctggtgttccagggggaggtg
gagtccattgctttgaaggacccaaaggagataaccaagatgttggagagtatcagtcag
tccaaggagttggccgctgattaccaaaagaaaaaagaagagctgctgatggctaaagag
aacacgcaatttcacttcaaccagaaaaaatctgccactgtggaaagaaaacaagtgtct
caagaaaagctagaggctcagaaataccaggctctgctagatgaccgtcatcagaaacat
ttgcagctgagccttgctgagctttatctcaatgaaagagacatcggtgctatcagtgac
acactgaaggagagacaacattctgcagcagctaagaacagcgaaatggtgaactgggag
caaactgtcaaagcccacaagaaggagcacggacgcctcaccagggagcaacagcatatc
gataaagagatccgcggtcaggagcattctctgtctcaggctcggtctcattacatcaaa
gccaaagtgaacacctctcatcacattaagaaggctgaagagatgcataatgccgtgcag
aagagtcggaagttgttggccattaaagagcaggaagtgacagctggtcatcaggaagtg
gaagaacttggaagaacttggaagaactacgagaaacagatccaggaagaaggagctgca
agaggaagagacatcgagctggacgaggatcagttggagagatacaaagagttgaaggag
ttggcccagaagcagggggctgttgtcaatcagcaggcagagaagttgcactgggagctc
agggcggattctgaaaagatgtcctttgacctgcgcagaaaaaaggaggtggaggttgcc
atcaggaacagtcaaaagcacctggaagaattagaaaacagagcagaaaaactagaagag
tacaccaaaacttgcaagtcttccttggaggattaccatcagcaagaggagagcctgaca
gcagagctccagcatgtttctcagcgtaccaaagaggtgaaccaagagctgggtaaggtg
atggaggagctgaggaacgcccgtctggacagccatgagagtaaacggcagcagcagcgc
agagagctgcttgagaagctctgcaggctctttccagaaactctgtttggccgactttct
gacctgtgcagcccaattcataagaaataccagctggctgtcactaaggtgtttggcaac
aacatgaacgcaattgtggtgacttctgagaaagtagcacgtgaatgtatatgtttcatc
aaggaggaacgagcagagccagagatgttcctgcccatagactacttggttgtgaagcct
ctgaatgaacgactgagggagatttcaggtgccaagatgttggttgatgttgtacagatc
aatgctgcctcaggtgctgcccaactaagaaaaatagtgcagtatgtctgtgataatgct
ttggtgtgtgaaacgatgaaagatgccaggagagtggcctttgatggaaaggagcgtctt
aagacagtaaccttagacgggacgctgtttaaaacatcaggagtgatctctggcggttcc
agttatctgcgaaccaaagctcgttgctgggacgagaaagacatgctgcatctgaaggaa
cacagggacaacctgaccaaggagctgcgagatttaatgaaactgaagagaaaggagcca
gacttgaaacgaatcattgcacagtctcaaggagctcagacacgcctgaaatactccaca
actgatttggaaaacctccagaaaaaagtcatccctaaatgccacgcggagatctcacgg
atggagagtgaattagcaaacgctgactatcaaattcagatgcagcaggaaagtcttgaa
ggaaaaaatgcagaaatgaagaagattaaacaccagattgatcagatggaggacttggtg
ttttcagacttctgcgcagagattggtgtggacaacatcagagagtatgagcaggagcac
ttaaaacagcaggcagagcttgacaagaaacggctggagtttgaaagtcagtgtgcccag
ctgaatgcacaacttgactttgaagaaaaccaacttgaacaggacaggaaaaagcttcgc
aaaatggaagataccattaatatggaggagggaaccattgctgagctcaaaaaggaagag
cagaaactgttggaagccgtagaagagggtcagaataagctgctagagctaaagaaccag
ctgctcaccaaaaaaagccaagtggctttggccaaagctgagctggaccagaagtctcag
gagcttcaggagaataacaaagagttggtaaaacttcagcgtaaggtgatgtcagcagag
acgatgttggagcagaaacgcttggctagacacaacctgctgctggcctgcaagatccaa
ggcctgcccatcattatgctgtcaggcagcctgaatgaaatcagtgaggtgcatctgacc
acagattcagaaagtacttcagccactatggacatttacgagcgagaggcacagctagtc
atcgactactccgagctggacgaagagttcaggagtctccgggatgacgaggagacagag
gccttcatgaagaagctgaaggagtccgtctcctccctggaggaagtgctactttctacc
actgtacctaacctgaaagctctggagaaaataaatgaagtgaaagacaagttacaggga
gtgactgaagcttttgatgccagcactaaagcagccagaaaatgtaaccaggagtttgag
ctagtcaaagcccggcgctgcctcctcttcagtcagtgttttgagcatgtgtccgttgtg
attgatcaaatctataaaagaatttgcagaaacagtagtgcccaggctattctgagtgcc
gagactccagacgagccgtatttaggcggcatcaactacaactgtgtggctccagggaaa
cgcttcatgtcgatggacaacttgtcaggtggagaaaaagccattgctgctcttgccttg
ctgtttgccatccacagctttcgccctgctcctttcttcatcttggatgaagtggatgca
gctttggacaacacgaacattggcaaggtgaccagtttcatcagagaggagtccagacgg
aacatgcagatcatcgtcatctctctgaaggaggagtttttctccaaatctgacgctctg
ctgggcgtctattctgactttgatgagtgcatgttaagtcgcattctgaccctggacctg
cgtctttacgcactggatgaggacgacaacggaacgcaaagttga
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