Nematolebias whitei (Rio pearlfish): 119417517
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Entry
119417517 CDS
T08042
Symbol
col9a3
Name
(RefSeq) collagen alpha-3(IX) chain
KO
K08131
collagen type IX alpha
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh04510
Focal adhesion
nwh04512
ECM-receptor interaction
nwh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119417517 (col9a3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
119417517 (col9a3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
119417517 (col9a3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
nwh00535
]
119417517 (col9a3)
Proteoglycans [BR:
nwh00535
]
Extracellular matrix (ECM) proteoglycans
Others
119417517 (col9a3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
119417517
NCBI-ProteinID:
XP_037540662
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Position
11:20366431..20385864
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AA seq
678 aa
AA seq
DB search
MTACSALWVLLLCQLLSSSSAQRPGPRGPPGPPGLPGQPGRDGTDGKPGPAGLPGKPGPK
GKAGIPGAAGKLGLPGLPGIDGLTGPDGLAGKDGPTGEAGEAGPPGPPGPPGRGRPGAPG
LPGTNGLSGGVGPQGAVGAEGLPGLPGPPGPDGPPGLPGSLHDLNGDLLCPAICPPGPPG
PPGMPGFKGHTGHKGDKGEPGKDGEQGDLGPPGPAGAPGTVGLQGPRGLRGLQGPMGSVG
DRGLPGFRGKPGIAGIIGKPGDVGEKGPHGFKGPKGEIGKIGPKGAPGGLGPKGDPGMPG
RDGKDGTAGLDGEKGDPGRHGVVGEKGPNGLPGLQGKAGEKGSKGEVGDPGKPGEAGPSG
EPGIPGEIGVPGERGIAGPRGVAGGVGPAGNPGPLGVKGFQGVSGGLGDPGLPGPTGLRG
EFGDRGPVGASGVKGDMGVAGSDGLPGENGEPGPFGPVGQKGESGKQGELGPKGVTGPQG
ELGPRGVPGKQGPMGFQGEQGLPGIAGKTGVPGKLTSEQHIRELCGSMIDDQIAQLAANL
RRPLAPGMVGRPGPAGPPGKPGVAGTIGHPGTRGPPGYSGLPGELGDPGPRGDVGESGDK
GLTGKAIDGPSGDQGHQGLPGVAGIVKDGRDGSPGDPGEPGEPGRVGRTGHQGPPGICDT
SACQGASVVGKSSNPKNF
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atgacggcgtgctctgctctttgggtgctcctgctgtgccagcttttgtcatcctcctca
gctcagagacccggccccagaggaccccccgggccacccggactcccaggacaaccaggc
agggatgggaccgacgggaaacctggacctgctggactgccgggaaaacctggtcccaaa
ggaaaagcaggaatcccaggagctgcaggaaaactgggcctgccgggacttccagggatc
gatggtttgactggtcctgatggtcttgctggtaaagacggacccacaggagaggcaggt
gaagcagggcctcctggaccacccggacctcctggcagagggagaccaggagctccagga
ctacctggaaccaatggattgtctggaggagtcggaccccagggtgctgtgggcgctgaa
ggacttccaggacttccaggccctcctggccctgatggaccccctgggcttcctgggtct
cttcatgatctgaacggggaccttctgtgtcctgcaatctgcccccctggtcccccaggt
cctcctgggatgccaggatttaagggacacactggtcacaaaggagacaagggggagcct
ggaaaagatggagagcagggcgacctcggtccacctgggccagcaggtgctcctggcact
gtgggtctgcagggcccacgcggtctgagaggtttacaaggcccaatgggatctgtaggc
gacagaggcctgcccggcttcagaggcaagcccggcatcgcaggcatcatcggcaagcca
ggtgatgttggggaaaaaggaccacatgggttcaaaggacctaaaggagaaattggtaaa
ataggtcccaaaggagctcctgggggactgggacccaaaggggatccaggtatgcctggc
agagatggtaaagatgggacagcagggctggatggtgagaagggtgatcctggacgccat
ggagtagtgggagagaaagggccaaatggacttcctggcttacaaggaaaagctggagaa
aagggctccaaaggagaagttggtgatccggggaaacctggggaagcgggaccctctgga
gagccaggtattcctggtgagattggcgtcccgggagagagggggatagccggccccaga
ggagtggcgggaggtgtcggaccagcgggcaatcctggcccactgggagtgaaaggcttc
cagggagtcagtggaggtttgggtgatccaggtcttccggggccaacgggactccgtgga
gagtttggcgaccgaggtccagttggagcttcaggagttaaaggagacatgggtgtggca
ggaagtgatggtttaccaggagagaacggagagcccggaccttttgggccagttggacag
aaaggagagtcagggaagcagggggaactggggcctaagggtgtgacgggtccacaagga
gagcttgggccaagaggggttccaggaaaacagggaccaatgggcttccaaggggaacag
ggtctgccaggaatcgcaggaaagacaggagtacctggtaaactgacgagtgaacagcac
atcagagagctgtgtggctcgatgatcgacgatcagatcgcacagctggctgctaacctt
cgaaggcctctggcacctggaatggtgggccgccccggccctgcaggccctccaggaaag
ccaggagttgcaggaactattggacatccaggcactcgaggaccaccagggtacagtggc
ctaccgggagagctgggagatccaggtcccagaggtgatgttggagagtctggtgataaa
gggctcactggtaaagccattgatggaccctctggagaccaaggacaccaaggtctgccc
ggagtagctggaattgtcaaagacggccgtgacgggtctccaggagacccaggtgagcct
ggagagccaggcagggtaggtaggactgggcaccagggccctcctgggatctgtgataca
tcagcctgccagggagcttcggtcgtcgggaaatcctccaaccccaaaaatttttaa
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