Nematolebias whitei (Rio pearlfish): 119418011
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Entry
119418011 CDS
T08042
Symbol
col9a1b
Name
(RefSeq) LOW QUALITY PROTEIN: collagen, type IX, alpha 1b
KO
K08131
collagen type IX alpha
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh04510
Focal adhesion
nwh04512
ECM-receptor interaction
nwh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
119418011 (col9a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
119418011 (col9a1b)
09142 Cell motility
04820 Cytoskeleton in muscle cells
119418011 (col9a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
nwh00535
]
119418011 (col9a1b)
Proteoglycans [BR:
nwh00535
]
Extracellular matrix (ECM) proteoglycans
Others
119418011 (col9a1b)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
119418011
NCBI-ProteinID:
XP_037541185
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Position
1:53555444..53579913
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AA seq
731 aa
AA seq
DB search
MNKHEPLVAGLGPVSVWLDRSSGFNWGAFTGGFLCPTTFREKTTAQAFLLTRRESMAGAP
SVKGPFLVVLLQFVLICSSQRNQGPPGPPGPPGVPGIDGIAGERGDDGKDGPPGPDGDAG
KPGSSGLPGIPGKDGLTGPIGDPGPDGPPGQKGEPGQSGPRGAAGVGPDGPIGSRGPGGL
LGEIGKVGPPGTMGVIGPQGPRGPAGPRGATGVLGATDLCPNSCPPGTSGHPGLSGMKGH
KGVKGEAGEPGKQGHKGEEGDQGGPGEGGSQGPTGPQGIRGATGMMGPKGEIGTRGPDGE
PGPQGVAGAIGDRGQRGVMGEPGPKGEMGVQGSRGITGLPGPKGEPGLPGVDGREGIPGM
PGAKGSVGKSGVPGEVGLQGLPGLPGSSGTKGSSGPKGDSGQQGLPGTLGSTGKPGERGE
QGEVGPVGPIGEPGDIGEQGLVGPAGKPGGRGPKGDPGLPGLPGPPGLPGIKGERGERGG
PGPKGEQGGQGDEGDSGERGDAGDPGELGPKGETGTPGDPGQRGPEGSRGQPGIEGPPGT
PGPRGMQGNRGPRGVRGSQGPAGKEPSDQHIKQVCMRVMQEQLAQLAASLRRPETGAAGL
PGKPGPPGPPGSSGDNGFPGQAGARGLPGLKGPPGQMGLKGPKGELGDRGARGPTVRGPK
GQPGLPGLPGEPGKPGYGQDGVDGQRGPPGVPGQPGVPGLPGPAGLNGYCDPSACNLQAG
AVMDVKGPPGN
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atgaataaacatgagcccctggtagctggactgggacctgtttcggtgtggctggatcgc
tccagcggattcaactggggagctttcaccgggggattcctctgcccaacaactttcaga
gaaaagactacagctcaagctttcctgctcacacggagggagagcatggctggggcccca
agtgttaaagggccctttctcgtggtgctcctgcagtttgtcctcatttgctcttcacaa
aggaatcaaggaccccctggccctccaggacccccaggagtcccaggaattgatggaatt
gctggggaaaggggtgacgatggcaaggatggtcctccgggacctgatggggatgcaggt
aaacccggttcttcaggattacctggaattcctggaaaagacggtttgactggccccatt
ggagatcctgggcctgacgggcccccgggacagaaaggtgaacctggacaatctggacct
cgtggagcagctggtgttggaccagatggacccattggatcacgaggacctgggggactt
ttgggtgaaataggaaaagttggaccacctgggaccatgggtgtgatagggcctcaggga
cctcgtggaccagctgggcctagaggtgcaactggagtgctgggtgctactgatctgtgt
ccaaactcttgtccgcctggtacctctggacaccctggcctttctggtatgaagggccac
aaaggagtaaaaggtgaagcaggagagccggggaagcagggacacaagggtgaagaagga
gatcagggaggtccaggagagggtggatcccagggaccaacgggacctcagggaattcgt
ggagccacaggaatgatgggtcccaagggagagataggaactcgaggtcctgatggagag
ccaggtcctcagggagtggcaggggcaattggggaccgaggccagaggggcgtgatgggc
gagcctgggcctaaaggtgaaatgggtgttcaagggtcaagagggatcacagggcttcca
ggtcctaaaggagaacctggcctgccgggcgtggatggccgtgagggtattcctggaatg
ccaggagcaaagggaagtgttgggaagtcaggagttcctggagaggttggacttcagggg
cttcctggtttgccaggttcatcgggaacaaaaggctcgagtggcccaaagggtgacagt
ggtcagcaagggctgcctggaacactgggctccactggcaaacctggtgagcgtggagaa
caaggagaggtgggacctgttggacccatcggcgagcctggagatataggagagcaaggc
ctggtgggtccagctgggaagccaggtggaaggggtccaaaaggtgatcctggtctccct
ggtctcccaggtcctcccggcctacctggaataaaaggagagaggggagagcgtggagga
ccaggacctaaaggagaacaaggaggacaaggtgatgagggggattctggagagagaggg
gatgctggtgacccaggagaacttggacctaaaggagagaccggtacccctggtgaccct
ggccaaagaggtcccgaggggagtcgaggccagccgggcattgagggccctcctgggaca
cctggaccacgaggaatgcaagggaacaggggcccacgtggagtcagagggtcccaagga
ccagcgggtaaagagccaagtgatcagcatatcaaacaagtttgcatgcgagtcatgcaa
gaacagctggcccagttagctgctagtttaagaaggccggagactggcgctgcaggtttg
cctgggaaacctggacctcctgggccccctggttcctcaggagacaatgggtttccaggg
caggctggagcaagggggcttccaggactcaaagggccaccggggcaaatggggctaaaa
gggccaaaaggtgaactgggagacagaggggcgagagggcccactgtgcgaggacctaaa
ggtcagccaggacttcctggacttcctggagagcccggcaaacctggctatggtcaagat
ggtgttgacgggcagaggggacctccgggcgttcctggacagcctggtgtgcctggtctt
ccaggtccagctggtcttaatggttattgtgacccatcagcctgcaacctccaggcagga
gctgtaatggatgtgaagggacccccagggaactaa
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