Nematolebias whitei (Rio pearlfish): 119421185 Help Entry 119421185         CDS       T08042                                  Symbol col5a3a Name (RefSeq) collagen, type V, alpha 3a   KO K19721   collagen type V/XI/XXIV/XXVII, alpha Organism nwh  Nematolebias whitei (Rio pearlfish) Pathway nwh04820   Cytoskeleton in muscle cells Brite KEGG Orthology (KO) [BR:nwh00001]  09140 Cellular Processes   09142 Cell motility    04820 Cytoskeleton in muscle cells     119421185 (col5a3a)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:nwh00536]     119421185 (col5a3a) Glycosaminoglycan binding proteins [BR:nwh00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    119421185 (col5a3a) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Collagen COLFI Laminin_G_2 Laminin_G_3 Laminin_G_1 Motif Other DBs NCBI-GeneID:  119421185 NCBI-ProteinID:  XP_037544497 LinkDB All DBs Position 15:35322655..35360511 Genome browser AA seq 1853 aa AA seqDB search MVSAEWLSVAAADPIDVLRALGLSENMEGVSLEAGLCTSRTGSEEMDLAYKIKKIQLSAP TKQLYPDSKFPENFSLMTTLRATKGSQFFLLSVYDDQGVQQLGLEVGRSPVFLYEDQHGQ PTPELYPTFRKINLADGKWHRIAFSVHNKSVTLYLDCERAETLDLVRGDDAVVSTEGVTV FGTRLLDEEVFEGDIQQLMILEDSQAASDYCLNYMPDCDFALPHGSQALGKQELFQLESD TLMQRDEPTEQTEVSKKGRRDKNNKKKKDKSSRGKRKGKGKKGSRKKKHEEEGFEEGFLR VSTTLPEIQSWEPFQPTDLPDFRSSLKTIFPTQVFDITTMEMSTHKPDFTTKAPTVVPSL PPVYKVTEEEVTPLEKAVVVEYEDGLYGDLVEDVSVSTVTVSPNVTEHELLDYEEFKNDT EFEYEEYEIYEDDFDFAERERAETLNVEATLRAEKGQKGEPAIIEPGLLVMGPSGLPGPE GLPGPAGPTGPPGPRGDPGELGPQGRPGLPGVDGIPGPPGTLLMLPFHYGGDSQKGPGVS PLEAQAQAILQQTKMSLQGPPGPLGLTGRPGPVGVRGPSGPKGDLGENGPSGPRGLPGPP GINGKPGKRGRAGVDGGRGSPGETGTKGDRGFDGLPGLPGNKGHIGDRGRPGPLGPVGEQ GEKGSDGPVGPRGQPGEPGPRGLVGPRGPPGAPGQAGIRGTDGVQGSKGNLGPSGEIGPP GQQGNPGAQGFPGPQGPIGLPGEKGPMGKQGIQGLLGVDGPPGHPGREGPPGEKGIQGLL GIQGPVGYPGIRGVKGADGVRGLKGSKGEKGEDGFPGPKGDMGVKGDRGDNGVPGPRGED GPEGLKGQSGPVGDAGQGGIAGEKGKLGVPGLPGYPGRQGPKGTLGFPGVAGMLGEKGRR GAAGTPGPGGQRGPNGARGGKGPKGPTGKPGEKGSAGQDGPPGAPGDQGPQGAQGGHGEP GPKGPNGPPGKDGLPGHPGQRGEPGFQGKNGPPGPPGVVGPQGKTGETGPAGDRGHPGAP GPPGEHGLPGTAGKEGAKGDPGPPGITGKNGPPGLKGFRGSRGTPGAAGPPGLKGGEGLP GVAGSTGATGERGPAGPAGAIGQPGRPGSTGPAGPTGEKGEPGEKGAVGPAGRDGEPGPT GLPGIAGSPGPPGEDGDKGEPGGPGQKGSKGDKGEAGPSGPVGIQGSVGQPGSSGADGEP GPRGQMGVYGAKGDEGPRGFKGPTGPSGLQGMPGPPGEKGESGHVGLMGPPGQHGPRGPQ GPTGAEGPPGSSGGVGQPGLVGEKGEDGEAGDPGTVGEPGPPGAKGDVGEKGDSGPPGTA GPPGTRGSPGEDGPKGNLGPIGFPGDLGPPGEPGANGVDGTPGPKGDSGELGKAGPQGAS GEPGPPGPPGRRGHVGASGKEGKQGIKGAKGATGTQGLIGKTGPVGPQGPPGRPGPEGLR GIPGPAGEHGLNGPQGQTGPPGPIGPPGLPGLKGEPGKKGEKGHGGLIGLIGPPGEFGEK GDRGLPGIQGLQGTKGDEGIPGPPGPVGPPGQPGLSGPAGEKGSKGEPGGLGAIGDPGPA GHPGPPGPPATVVQPLLIWDGSRKKRRQSDRTDGAAVSREEDVHFGTEDFLQGDQPLEDP EGMEEVFATLSSMKNEVDFMRRPLGTFESPARTCKELMMVQSNYKDGDYWIDPNQGCHRD SIKVFCNFTAFGETCLYPDKRIEMVKLSAWGKEKPGSWFSQYKKGKQFSYVDSNGNPVHV VQLTFLKLLSATAKQTFTYTCQNSAGWFDSTSHSYQHALRFRGSNDEELTQAKSPFITAV HDGCQSRKGQERTVLEIDSPSAELLPIIDVAPADFGSNNQKFGFQVGHVCFTG NT seq 5562 nt NT seq  +upstreamnt  +downstreamnt atggtaagtgctgagtggctctctgtagcagctgctgatcctattgatgttctgcgagcg ctcgggctgtcagagaacatggagggggtgtccttggaggctggtctctgcaccagcagg acgggctcggaggagatggacctggcttacaagatcaaaaagatccagctcagtgctccc actaaacagctataccctgattcaaaatttcctgagaatttctccctgatgactacctta agagctacaaaaggctcccagttcttccttctctccgtctacgatgaccagggggttcag cagctgggactcgaagtgggacggtcacctgtcttcctgtatgaagaccagcacggacag cccactccagaactataccccacattcaggaaaatcaacctggctgatggaaaatggcac aggatagccttcagcgtgcacaacaagtctgtgaccctatacttggattgtgagcgggcg gagaccctggatctggtgcgcggagacgatgctgtggtcagcaccgagggggtcactgtg tttggaacacgcttgctggatgaagaagtttttgagggagatattcagcagctgatgatt ctggaggactcccaggcggcttctgactactgtcttaactacatgccagactgtgacttt gctttgccacacggcagccaagctctcggcaagcaggagctcttccaacttgagtctgat actctgatgcaaagggacgaaccaactgagcaaacggaggtctccaaaaaaggcaggaga gacaaaaataacaaaaagaagaaagacaaaagctctcgaggaaaacgcaaaggcaagggc aaaaaggggtcgagaaagaaaaagcatgaagaggagggttttgaggagggcttcctcaga gtatccacaactctgccagagattcaatcatgggaacccttccagcccacagaccttcca gactttaggagctcccttaaaacaatatttcccactcaagtttttgatataaccaccatg gagatgtccacacataaacctgacttcacaactaaggcccccactgtggtgcccagctta ccgcctgtatacaaggttacagaggaggaggtcacacctctggagaaggcagtggtggtg gagtatgaagacggtctttacggagacctcgttgaagatgtctcagtttccacagtaact gtgagcccaaatgtcaccgagcatgagcttcttgactatgaagagttcaaaaatgacacg gagtttgagtatgaagagtatgaaatctacgaggacgactttgactttgcagaacgggaa agagcggagacgttgaacgttgaggctacactcagagcagaaaagggccaaaagggagag ccagctattattgaaccgggtctgttagtgatgggaccttcaggcctcccgggaccagag ggtcttcctggaccagctggaccaacaggccctccaggacccaggggtgatccaggtgaa ctgggtccccaaggacgtcctggccttcctggcgttgatggaatcccaggtcctccagga accctactgatgttaccatttcattatggaggggattcacagaagggaccaggggtgtct cccctggaggcacaagcacaagccatcctgcagcagactaagatgtcacttcagggacct ccaggtccattgggtcttacaggacgaccaggcccggtgggtgttcggggtccatctggg ccaaagggtgacctgggagaaaacggtccctctgggcctcgtggtttgccaggcccccct gggattaatggaaagccaggcaagaggggacgcgcaggtgtagacggaggtcgtggatct ccaggtgaaacgggcacaaagggtgacagaggctttgacggtctgccaggtctcccagga aacaagggacacataggggacagaggaaggcctggtcctctagggcctgttggagagcaa ggagaaaagggatctgatggacctgtcggaccaagagggcaaccaggtgaacctggtcca cgaggtctagttgggccaagggggccacccggggcacctggacaagcggggattcgtgga acagatggagttcaagggtcaaagggtaacctgggcccatctggagaaatagggccccca ggtcaacaaggaaatccaggagcacagggctttcccggtcctcagggtcctattggactg ccaggagagaagggtcctatgggtaaacaaggcatacaaggactattaggtgttgatggt cctccgggtcacccaggacgagagggccccccaggagaaaaaggcatccaaggtttactt ggcatccagggccctgttgggtatccaggcattcgtggagtcaagggagcagatggagtt agaggtctgaaaggaagcaaaggagaaaaaggagaagacggcttcccagggccaaagggt gacatgggtgtcaaaggagacaggggtgataacggagttcctggtcctcgtggagaggat ggaccagaagggctaaagggtcaatcaggacctgtaggagatgcaggacaaggtggaata gcaggcgagaagggcaaacttggtgtgcctggtttacctggttacccaggaagacaaggt cctaagggaacacttggcttccctggtgtagccggcatgctgggagagaaaggaagaagg ggtgcagctggtacgccaggtccagggggtcaacgaggtcctaatggagcacggggagga aaagggccaaagggaccaactggaaagcctggagaaaagggttctgctggtcaagatggt cctccaggagctcctggagaccagggtcctcaaggagcacagggtgggcatggtgaacca gggcctaaaggacctaatggtccacctggaaaggatggattaccaggacatccaggtcag agaggagaaccaggctttcaaggaaagaatggacctcctggtccaccaggagttgttgga ccacaggggaaaactggtgagacagggccagctggagatagaggtcatccaggtgcgcca ggaccaccaggtgagcatggtttaccaggaactgcaggaaaagagggtgccaagggagat ccaggtccaccaggaatcacaggaaagaatggacctcctgggcttaaaggcttcagaggg agcagagggactcctggtgcagcgggacctccaggtctaaagggaggagaaggcttacct ggtgtggcaggatctactggtgccacaggagagaggggtcccgctgggccagctggtgcc attggccagccaggacggccaggcagcactggtcctgctgggcctactggagagaaaggc gagccaggagagaagggtgctgtggggccagctgggcgtgatggggaaccaggacctaca gggctgcctgggattgcaggatcgcctggacctcctggggaggacggagacaagggagag ccaggaggacccggccagaaaggcagcaaaggcgacaaaggagaagctggaccatcagga cctgttggtattcaagggtctgtgggccaaccaggatcatctggtgcagatggtgagcca ggtcctcgtggacaaatgggtgtgtatggagcaaaaggtgatgaaggacctagggggttt aaggggccaactggtccctctggtctacagggaatgccaggaccaccaggagaaaaagga gagagtggtcatgttggtttgatgggacctccaggacagcatggcccacgaggccctcag ggacccactggtgccgagggcccacctggttcgtctggtggagttgggcagcctggactt gttggagagaagggtgaggatggagaagcaggagaccctggaacagttggagagcctggt cctcctggggctaaaggtgatgtaggggagaagggtgactctggcccccctggaacagct ggacctcctggaaccagaggttctccaggagaagatggacccaagggcaaccttggtccc attggatttcctggagatttagggcctcctggagaaccaggtgccaatggagttgatggc acccctggacctaaaggggatagtggagaacttgggaaagcaggaccacaaggagcctct ggagagcccggtcctccaggaccacctggtcgaaggggtcatgttggtgcttcaggaaaa gaaggaaaacaaggcataaaaggagccaaaggtgctacaggaactcaaggtttaattgga aagacaggcccagtaggacctcaaggaccacctggaaggcctggtccagaagggctccga ggcattccaggtcctgcgggtgaacatgggttaaacggaccacaaggacaaactggacca ccaggaccaatagggccaccaggacttccaggactaaaaggagagccagggaaaaaagga gaaaaaggtcatggagggttgattggtttaattggccccccaggggaatttggggagaaa ggagaccgaggtttaccaggaatccaaggtttacaaggaactaaaggagatgagggtata cctggtccacctggtcccgtcggcccaccaggtcaacctgggctgtctggtccagctggt gagaaaggatcgaagggagagccgggaggacttggcgccataggagatccaggccctgct ggccatccaggaccccctggaccacctgcaacggtggttcagcccctgctgatttgggat ggaagtcgaaagaaaagaaggcagtcagatcgaacagacggagctgctgtgtccagggag gaagatgtgcactttggcactgaagactttcttcaaggagatcagcctctggaggatcct gagggaatggaggaagtctttgctaccctctcgtctatgaaaaatgaagtggatttcatg aggaggcctctaggaacatttgagagccctgcccgaacctgcaaagaactgatgatggtt cagtcgaactacaaagatggggactactggatcgatcctaaccagggctgccacagagac tccattaaggtcttttgtaacttcacagcctttggagagacctgtctctacccggacaaa aggattgaaatggtcaaattatcagcatggggcaaagagaaaccaggaagctggtttagc cagtacaagaagggcaaacagttctcttatgttgacagcaatgggaaccctgtgcatgta gtccagctgaccttcctgaagcttttaagtgccacagccaagcagaccttcacctacacc tgtcagaactcggcaggctggtttgacagcacctcccactcctaccagcatgccctccgc ttccggggtagcaatgatgaggagctcacccaagccaaaagcccattcatcacagcagtg catgatggatgccagtcccgcaaaggtcaggaaaggacagttttagagatcgactccccc tcggcagagctgctcccaattatagatgtggctccagcagactttggcagcaacaaccag aagtttggatttcaagttggacacgtgtgcttcactggttaa

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