Nematolebias whitei (Rio pearlfish): 119422726
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Entry
119422726 CDS
T08042
Symbol
patl1
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
nwh
Nematolebias whitei (Rio pearlfish)
Pathway
nwh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nwh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119422726 (patl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nwh03019
]
119422726 (patl1)
Messenger RNA biogenesis [BR:
nwh03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119422726 (patl1)
mRNA degradation factors
5'-3' decay
Decapping complex
119422726 (patl1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAT1
LRR_RI_capping
Motif
Other DBs
NCBI-GeneID:
119422726
NCBI-ProteinID:
XP_037546048
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All DBs
Position
16:complement(7721732..7732712)
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AA seq
821 aa
AA seq
DB search
MLRIQSLDDDCTLEEEDEGLNEEEDEIDQFNDDTFGAGAIDDDWQEEHKRLAELDERDGL
GAGFVLGGGGMGGELDLGGAKRSSSVHLPSSSGQPPLQSSLLSLGLSSSSSGPPHRPDAE
DRAGEGGLAESLARLILEADPAIAGVGAAERPGSSPGSTGSGTSSLHRLDQPRVLPQSSI
PQQHQLPPGPHTSGLPASSMLSYQQQQHLLRRSSAPIAQMNSHSIWENSMCFGPVSVSPG
LSTHMEDSPLMSIIKEVGLPKRAPQGRSDEGRDLSERVPPPRSSSPVIGSPPVRAVPIGT
PPKQPMSHALNHQIHHPTAVHVRAPAQHRYPTPFPERLSPNALLNIANSPLCRGPFPPRV
GPVLSQIQRAQLLNSQVGGFPRGGPGPPLLPGGGFRPFFSGPPPPHGHRMGPPPLHGPLS
HAPPVRHNTTHLHPQHRRMLTQRLQSRGGDRVRTGLDRGSRDPYSNLMSQKEKEWVTKIQ
MMQLQSTDPYLDDYYYQNYYEKLEKRQEKERDSSSKKEHATKLITPQVAKVEHTYRPVQF
AGSLGKLTVSSVNNPRKMIDAVVTTRSDDEEKREKQVWNKRRQILYTVEKMYTLLLEVQD
FEKRFVQTPEEERQALLEQHKSNMEQLCGSLREKEWDDRVSDELCVMIMSVRKGKRLIAR
LLPFLPSMQAAAVVMAIARNLPTLAKKDKQEQVLSWLVEPVSAVVQLLSSSALTDLLQEL
QGGEGQLAAVLQNKFGVTLLYLILSEGERMQSSDPNCQLMDDNRWTELVFSVTRELLGVP
SSSLSPPLLTPPNLLSLFSRYVDRQRLELLEDKLQISASSR
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atgcttcgaattcagtccctggatgatgactgtacgttggaggaggaagatgaggggcta
aacgaggaggaagatgaaatcgatcagttcaacgacgacaccttcggggcgggggccatc
gacgacgactggcaggaggaacacaaacgcctcgctgagctcgacgagcgcgatgggttg
ggggcggggtttgtgttgggaggaggtgggatgggaggagagttggatttaggaggagcg
aagcgctcgtcctccgtgcacctcccttcctcttcaggccaaccccctctccagtcttcc
ctcctgtccttaggtttgtcctcgtcgtcttctggaccgccacacagaccagatgcagag
gaccgagcaggagaaggtggcttggccgagtctctggccagactcatcctggaggcggac
ccggccatcgcaggggttggagccgccgagaggcccggttcgtctcccggctccacaggg
tccggtacatcctctctgcacaggctggaccaaccccgagtcctgccgcagtcctccatc
cctcagcagcaccagctgcctcctggaccccacacctcaggccttcctgcctcctccatg
ctcagctaccagcagcagcagcacctgctgcgcaggagctccgcccccatcgctcagatg
aactctcacagtatctgggagaacagtatgtgttttggaccggtcagcgtctctcctgga
ctctccacacacatggaggacagtccactgatgtccatcatcaaagaggtgggtcttcct
aaacgagcccctcaggggaggagcgacgaaggacgggatctgtctgagagggttccaccg
ccgcgctcctcctcccctgtgattggctcgcctccggtgagggcggtgcctatcgggact
ccacccaagcagccaatgagccacgccctgaaccatcagatccaccaccccacagcggtt
catgtccgagccccagcccagcacaggtaccccacccccttccctgagcgcctgtcaccc
aacgccctcctgaacatagctaactctccgctgtgtcgcggcccgtttccccccagagtc
ggtccagttctgtcccagatccagagagcccagctgctcaactcccaggtggggggtttt
cctcgcggtggccccggcccccctttgttacctggtggaggcttcaggccattcttcagt
ggcccccctcctccgcacggccacaggatgggcccgcctcctcttcacggacccctcagt
catgcgccgccggtccggcacaacaccacgcacctccacccgcagcaccgccgaatgctc
acccagcgcctgcagagccgaggaggggaccgtgtcaggacgggactggaccggggcagc
agggacccctacagtaacctgatgtctcagaaggagaaggagtgggtcacaaagatccag
atgatgcagctgcagagcaccgacccgtacctggacgactactactaccagaactactat
gagaagctggagaagcgtcaggagaaggagcgagacagcagcagcaagaaggagcacgcc
accaagctcatcacgccgcaggtcgccaaggtggaacatacctacaggcccgttcagttc
gccggctctctggggaagctgacggtgtcgagcgtgaacaaccccaggaagatgatcgac
gccgtggtgacgacccgctccgacgatgaggagaagagggagaagcaggtgtggaacaag
aggcgacagattctgtacactgtggagaagatgtacactctgctcctggaggtccaggac
ttcgagaagcgttttgttcagaccccggaggaggagcgccaggctctgctggagcagcac
aagtccaacatggagcagctgtgcggctcactgagggagaaggagtgggacgacagggtg
agtgatgagctgtgcgtgatgatcatgtcagtgaggaaaggcaagcggctcatcgccagg
ctcctccccttcctgccctcaatgcaggctgctgctgtcgtcatggcgatcgctcgcaac
ctccccacgttggctaagaaggacaaacaagagcaggtgttgtcctggttggtggagccg
gtttctgctgtcgttcagttgctctcaagctccgccctcacagatctgctgcaggagctg
cagggcggcgagggacagctggctgcagttctgcaaaacaagttcggcgtgacgctgctc
tacctgatcctgagcgaaggagagaggatgcagagctccgacccgaactgtcagctgatg
gacgacaatcgatggaccgagctggtgttttctgtgaccagggagctgctcggcgtcccg
tcttcatccctctcccctcccctcctcaccccacccaacctgctgtccctgttctcgcgc
tacgtggaccgacagaggctggagctgctagaggacaagctacagatctctgcttcgtcc
aggtag
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